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Mitogenome Announcement

The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern

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Pages 801-802 | Received 30 May 2018, Accepted 18 Jun 2018, Published online: 13 Aug 2018

References

  • Andrews S. 2010. FastQC: a quality control tool for high throughput sequence data. Cambridge (UK): The Babraham Institute. [accessed 2017 July 20]. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
  • Hovenkamp PH. 1986. A monograph of the fern genus Pyrrosia (Polypodiaceae). Leiden Bot Ser. 9:1–280.
  • Kazutaka K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • National Pharmacopoeia Committee. 2010. Pharmacopoeia of People’s Republic of China. Beijing: Chemical Industry Press. [in Chinese].
  • Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686–689.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20:3252–3255.
  • Wei XP, Qi YD, Zhang XC, Li L, Hui Shang, Ran Wei, Liu HT, Zhang BG. 2017. Phylogeny, historical biogeography and characters evolution of the drought resistant fern Pyrrosia Mirbel (Polypodiaceae) inferred from plastid and nuclear markers. Sci Rep. 7:12757.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhang XC, Lu SG, Lin YX, Qi XP, Moore S, Xing FW, Wang FG, Hovenkamp PH, Gilbert MG, Nooteboom HP, et al. 2013. Polypodiaceae. In: Wu ZY, Raven PH, Hong DY, eds., Flora of China. Vols. 2–3 (Pteridophytes). Beijing: Science Press; p. 758–850.