708
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L.

&
Pages 918-920 | Received 03 Jul 2018, Accepted 08 Jul 2018, Published online: 20 Aug 2018

Reference

  • Andrews S. 2015. FastQC: a quality control tool for high throughput sequence data. http://www. bioinformatics.babraham.ac.uk/projects/fastqc/.
  • Ariani A, Teran JCBMY, Gepts P. 2016. Genome-wide identification of SNPs and copy number variation in common bean (Phaseolus vulgaris L.) using genotyping-by-sequencing (GBS). Mol Breed. 36(7):87.
  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5): 455–477.
  • Bi G, Mao Y, Xing Q, Cao M. 2017. HomBlocks: a multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching. Genomics. 110(1): 18–22.
  • Bitocchi E, Bellucci E, Giardini A, Rau D, Rodriguez M, Biagetti E, Santilocchi R, Spagnoletti Zeuli P, Gioia T, Logozzo G, et al. 2013. Molecular analysis of the parallel domestication of the common bean (Phaseolus vulgaris) in Mesoamerica and the Andes. New Phytol. 197(1):300–313.
  • Graham PH, Ranalli P. 1997. Common bean (Phaseolus vulgaris L.). Field Crops Res. 53(1–3):131–146.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Lowe TM, Chan PP. 2016. tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes. Nucleic Acids Res. 44:54–57.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20(17):3252–3255.