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Mitochondrial DNA Part B
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Volume 3, 2018 - Issue 2
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MitoGenome Announcement

Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species

Mingze XiaKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China; ;University of Chinese Academy of Sciences, Beijing, China; View further author information
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Faqi ZhangKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China; ;Qinghai Provincial Key Laboratory of Crop Molecular Breeding, Xining, China; Correspondence[email protected]
View further author information
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Hua RaoCollege of Life Sciences, Shaanxi Normal University, Xi’an, ChinaView further author information
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Xiaofeng ChiKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China; View further author information
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Gulzar KhanKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China; View further author information
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Yu ZhangKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China; ;University of Chinese Academy of Sciences, Beijing, China; View further author information
,
Jingya YuKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China; ;University of Chinese Academy of Sciences, Beijing, China; View further author information
&
Shilong ChenKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, China; Correspondence[email protected]
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Pages 1187-1188 | Received 12 Aug 2018, Accepted 31 Aug 2018, Published online: 26 Oct 2018

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Son P, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19:455–477.
  • Byng JW, Chase MW, Christenhusz MJM, Fay MF, Judd WS, Mabberley DJ, Sennikov AN, Soltis DE, Soltis PS, Stevens PF, et al. 2016. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Bot J Linnean Soc. 181:1–20.
  • Chen Y, Chen Y, Shi C, Huang Z, Zhang Y, Li S, Li Y, Ye J, Yu C, Li Z, et al. 2018. SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data. GigaScience. 7:gix120.
  • Chi X, Wang J, Gao Q, Zhang F, Chen S. 2018. The complete chloroplast genomes of two Lancea species with comparative analysis. Molecules. 23:602.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Gu C, Hultgård U-M. 2001. Parnassia. In: Wu Z, Co PHR, editors. Flora of China. Beijing: Science Press and Missouri Botanical Garden; p. 358–379.
  • Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13:715.
  • Lowe TM, Chan PP. 2016. tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes. Nucleic Acids Res. 44:W54–W57.
  • Pace L. 1912. Parnassia and some allied genera. Botanical Gazette. 54:306–329.
  • Simmons MP, Savolainen V, Clevinger CC, Archer RH, Davis JI. 2001. Phylogeny of the celastraceae inferred from 26S nuclear ribosomal DNA, phytochrome B, rbcL, atpB, and morphology [Review]. Mol Phylogen Evol. 19:353–366.
  • Simmons MP. 2004. Parnassiaceae. In: Kubitzki K, editor. The Families and Genera of Vascular Plants. Berlin, Heidelberg: Springer; p. 291–296.
  • Takhtajan A. 1987. Systema Magnoliophytorum. Leningrad: Nauka.
  • Thomson AM, Vargas OM, Dick CW. 2018. Complete plastome sequences from Bertholletia excelsa and 23 related species yield informative markers for Lecythidaceae. App Plant Sci. 6:e01151.
  • Wang W, Chen S, Zhang X. 2017. Characterization of the complete chloroplast genome of the golden crane butterfly, Euonymus schensianus (Celastraceae). Conser Gen Res. 9:545–547.
  • Yang J, Wang Y, MÖLler M, Gao L, Wu D. 2012. Applying plant DNA barcodes to identify species of Parnassia (Parnassiaceae). Mol Ecol Res. 12:267–275.

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