http://orcid.org/0000-0002-7180-6672
References
- Botero-Castro F, Delsuc F, Douzery EJP. 2016. Thrice better than once: quality control guidelines to validate new mitogenomes. Mitochondrial DNA Part A. 27:449–454.
- Gissi C, Pesole G, Mastrototaro F, Iannelli F, Guida V, Griggio F. 2010. Hypervariability of ascidian mitochondrial gene order: exposing the myth of deuterostome organelle genome stability. Mol Biol Evol. 27:211–215.
- Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, et al. 2013. MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol. 30:2531–2540.
- Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
- Mabragaña E, Díaz de Astarloa JM, Hanner R, Zhang J, González Castro M. 2011. DNA barcoding identifies Argentine fishes from marine and brackish waters. PLoS One. 6:e28655.
- Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, Satoh TP, Yamaguchi M, Kawaguchi A, Mabuchi K, et al. 2003. Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol. 26:121–138.
- Peng Y, Leung HCM, Yiu SM, Chin FYL. 2010. IDBA – a practical iterative de Bruijn graph de novo assembler. In: Berger B, editor. Research in Computational Molecular Biology: 14th Annual International Conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010 Proceedings. Berlin, Heidelberg: Springer Berlin Heidelberg; p. 426–440.
- Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539–542.
- Rubinstein ND, Feldstein T, Shenkar N, Botero-Castro F, Griggio F, Mastrototaro F, Delsuc F, Douzery EJP, Gissi C, Huchon D. 2013. Deep sequencing of mixed total DNA without barcodes allows efficient assembly of highly plastic ascidian mitochondrial genomes. Genome Biol Evol. 5:1185–1199.
- Satoh TP, Miya M, Mabuchi K, Nishida M. 2016. Structure and variation of the mitochondrial genome of fishes. BMC Genomics. 17:719.
- Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.