1,208
Views
1
CrossRef citations to date
0
Altmetric
Mito Communication

Population genetic diversity of an odorous frog Odorrana grahami (Amphibia: Anura: Ranidae) in relation to conservation based on mitochondrial DNA

, , , &
Pages 57-61 | Received 01 Aug 2018, Accepted 20 Sep 2018, Published online: 26 Nov 2018

References

  • Che J, Zhou WW, Hu JS, Yan F, Papenfuss TJ, Wake DB, Zhang YP. 2010. Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia. Proc Natl Acad Sci USA. 107:13765–13770.
  • Clement M, Posada D, Crandall K. 2000. TCS: a computer program to estimate gene genealogies. Mol Ecol. 9:1657–1660.
  • Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 9:772.
  • Excoffier L, Laval G, Schneider S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform. 1:47–50.
  • Fei L, Hu SQ, Ye CY, Huang YZ. 2009. Fauna sinica, amphibia Vol. 3, Anura: Ranidae. Beijing: Science Press.
  • Fei L, Ye CY, Jiang JP. 2012. Colored atlas of Chinese amphibians and their distributions. Chengdu: Sichuan Publishing House of Science and Technology.
  • Frost DR. 2018. Amphibian species of the world version 6.0. New York: American Museum of Natural History; [accessed 2018 March 11]. http://research.amnh.org/vz/herpetology/amphibia/.
  • Fu YX. 1997. Statistical test of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147:915–925.
  • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59:307–321.
  • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696–704.
  • Jiang ZG, Jiang JP, Wang YZ, Zhang E, Zhang YY, Li LL, Xie F, Cai B, Cao L, Zheng GM, et al. 2016. Red list of China’s vertebrates. Biodiv Sci. 24: 500–551.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059–3066.
  • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451–1452.
  • Liu HX, Li Y, Liu XL, Xiong DM, Wang LX, Zou GW, Wei QW. 2015. Phylogeographic structure of Brachymystax lenok tsinlingensis (Salmonidae) populations in the Qinling Mountains, Shaanxi, based on mtDNA control region. Mitochondrial DNA. 26:532–537.
  • Miracle AL, Campton DE. 1995. Tandem repeat sequence variation and length heteroplasmy in the mitochondrial DNA D-loop of the threatened Gulf of Mexico sturgeon, Acipenser oxyrhynchus desotoi. J Hered. 86:22–27.
  • Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual. New York: Cold Spring Harbor Laboratory Press.
  • Sun P, Shi Z, Yin F, Peng S. 2012. Genetic variation analysis of Mugil cephalus in China sea based on mitochondrial COI gene sequences. Biochem Genet. 50:180–191.
  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585–595.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis using evolutionary distance. Mol Biol Evol. 30:2725–2729.
  • Wang B, Xie F, Li JN, Wang G, Li C, Jiang JP. 2017. Phylogeographic investigation and ecological niche modelling of the endemic frog species Nanorana pleskei revealed multiple refugia in the eastern Tibetan Plateau. PeerJ. 5:e3770.
  • Weiss S, Marić S, Snoj A. 2011. Regional structure despite limited mtDNA sequence diversity found in the endangered Huchen, Hucho hucho (Linnaeus, 1758). Hydrobiologia. 658:103–110.
  • Zhang DR, Chen MY, Murphy RW, Che J, Pang JF, Hu JS, Luo J, Wu SJ, Ye H, Zhang YP. 2010. Genealogy and palaeodrainage basins in Yunnan Province: phylogeography of the Yunnan spiny frog, Nanorana yunnanensis (Dicroglossidae). Mol Ecol. 19:3406–3420.