883
Views
3
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

MitochonTrakr: a reference collection of high-quality mitochondrial genomes for detecting insect species in food products

, , &
Pages 292-293 | Received 22 Sep 2018, Accepted 20 Oct 2018, Published online: 24 Dec 2018

References

  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
  • Cameron SL. 2014. How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research. Systematic Entomol. 39:400–411.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45:e18.
  • Gomez-Rodriguez C, Crampton-Platt A, Timmermans M, Baselga A, Vogler AP. 2015. Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages. Methods Ecol Evol. 6:883–894.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach. Nucleic Acids Res. 41:1–9.
  • Ishiwata K, Sasaki G, Ogawa J, Miyata T, Su ZH. 2011. Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences. Mol Phylogenetics Evol. 58:169–180.
  • Linard B, Crampton-Platt A, Gillett C, Timmermans M, Vogler AP. 2015. Metagenome skimming of insect specimen pools: Potential for comparative genomics. Genome Biol Evol. 7:1474–1489.
  • Pava-Ripoll M, Miller AK, Ziobro GC. 2017. Insect contaminants in foods: Detection limits of a qualitative PCR-based method. T4-09. IAFP Annual Meeting. July 9–12. 2017. Tampa, FL. 1.
  • Sasaki G, Ishiwata K, Machida R, Miyata T, Su ZH. 2013. Molecular phylogenetic analyses support the monophyly of Hexapoda and suggest the paraphyly of Entognatha. Bmc Evolutionary Biology. 13:1–9.
  • Zhang N, Ramachandran P, Wen J, Duke JA, Metzman H, McLaughlin W, Ottesen AR, Timme RE, Handy SM. 2017. Development of a reference standard library of chloroplast genome sequences, GenomeTrakrCP [Article]. Planta Med. 83:1420–1429.