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Mitochondrial DNA Part B
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Volume 4, 2019 - Issue 1
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Mitogenome Announcement

Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco

Seon-Hee KimDepartment of Biological Sciences, Sungkyunkwan University, Gyeonggi-do, Republic of Korea; View further author information
,
José A. MejíasDepartment of Plant Biology and Ecology, Universidad de Sevilla, Seville, SpainView further author information
&
Seung-Chul KimDepartment of Biological Sciences, Sungkyunkwan University, Gyeonggi-do, Republic of Korea; Correspondence[email protected]
View further author information
Pages 164-165 | Received 10 Oct 2018, Accepted 20 Oct 2018, Published online: 08 Jan 2019

References

  • Hereward JP, Werth JA, Thornby DF, Keenan M, Chauhan BS, Walter GH. 2018. Complete chloroplast genome of glyphosate resistant Sonchus oleraceus L. from Australia, with notes on the small single copy (SSC) region orientation. Mitochondrial DNA B. 3:363–364.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
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  • Kim S-C, Crawford DJ, Jansen RK. 1996. Phylogenetic relationships among the genera of the subtribe Sonchinae (Asteraceae): evidence from ITS sequences. Syst Bot. 21:417–432.
  • Kim S-C, Lee C, Mejías JA. 2007. Phylogenetic analysis of chloroplast DNA matK gene and ITS of nrDNA sequences reveals polyphyly of the genus Sonchus and new relationships among the subtribe Sonchinae (Asteraceae: Cichorieae). Mol Phylogenet Evol. 44:578–597.
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  • Mejías JA, Chambouleyron M, Kim S-H, Dolores Infante M, Kim S-C, Léger J-F. 2018. Phylogenetic and morphological analysis of a new cliff-dwelling species reveals a remnant ancestral diversity and evolutionary parallelism in Sonchus (Asteraceae). Plant Syst Evol. 304:1023–1040.
  • Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32:268–274.
  • Timme RE, Kuehl JV, Boore JL, Jansen RK. 2007. A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. Am J Bot. 94:302–312.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.

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