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Mitochondrial DNA Part B
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Volume 4, 2019 - Issue 1
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Mito Communication

Complete mitogenomes of five ecologically diverse Australian freshwater fishes

Daniel J. SchmidtAustralian Rivers Institute, Griffith University, Nathan, AustraliaCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0001-5638-497X
ORCID Icon &
Carmel McDougallAustralian Rivers Institute, Griffith University, Nathan, Australia
Pages 191-193 | Received 17 Oct 2018, Accepted 20 Oct 2018, Published online: 26 Dec 2018

References

  • Bishop CR, Hughes JM, Schmidt DJ. 2018. Mitogenomic analysis of the Australian lungfish (Neoceratodus forsteri) reveals structuring of indigenous riverine populations and late Pleistocene movement between drainage basins. Conserv Gen. 19:587–597.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45:e18
  • Harrisson K, Pavlova A, Gan HM, Lee YP, Austin CM, Sunnucks P. 2016. Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species. Heredity. 116:506–515.
  • Hughes JM, Hillyer MJ. 2006. Mitochondrial DNA and allozymes reveal high dispersal abilities and historical movement across drainage boundaries in two species of freshwater fishes from inland rivers in Queensland, Australia. J Fish Biol. 68:270–291.
  • Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, et al. 2013. MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol. 30:2531–2540.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059–3066.
  • Mondol RKM. 2016. Population connectivity of two Australian freshwater fishes in a large tropical dentritic river network PhD Thesis, Griffith University: Griffith University.
  • Sato Y, Miya M, Fukunaga T, Sado T, Iwasaki W. 2018. MitoFish and MiFish Pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA Metabarcoding. Mol Biol Evol. 35:1553–1555.
  • Satoh TP, Miya M, Mabuchi K, Nishida M. 2016. Structure and variation of the mitochondrial genome of fishes. Bmc Genomics. 17:719.
  • Schmidt DJ. 2016. The complete mitogenome of an Australian carp gudgeon, hybridogenetic biotype HAHB (Hypseleotris: Eleotridae). Mitochondrial DNA A. 27:4582–4583.
  • Schmidt DJ, Bond NR, Adams M, Hughes JM. 2011. Cytonuclear evidence for hybridogenetic reproduction in natural populations of the Australian carp gudgeon (Hypseleotris: Eleotridae). Mol Ecol. 20:3367–3380.
  • Schmidt DJ, Crook DA, Macdonald JI, Huey JA, Zampatti BP, Chilcott S, Raadik TA, Hughes JM. 2014. Migration history and stock structure of two putatively diadromous teleost fishes, as determined by genetic and otolith chemistry analyses. Freshwater Sci. 33:193–206.
  • Schmidt DJ, Espinoza T, Real K, Dunlop A, Kennard M, Hughes JM. 2018a. Improved genetic markers for monitoring recruitment dynamics in the endangered Mary River cod (Maccullochella mariensis). J Appl Ichthyol. 34:633–637.
  • Schmidt DJ, Huey JA, Hughes JM. 2018b. Genome-wide SNPs identify limits to connectivity in the extreme freshwater disperser, Spangled Perch Leiopotherapon unicolor (Terapontidae). J Hered. 109:320–325.
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.
  • Unmack PJ. 2001. Biogeography of Australian freshwater fishes. J Biogeogr. 28:1053–1089.

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