Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 4, 2019 - Issue 1
Submit an article Journal homepage
1,981
Views
9
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The chloroplast genome of the marine microalga Tisochrysis lutea

Alejandra B. Méndez-LeyvaSchool of Biological Sciences, The University of Manchester, Manchester, UKView further author information
,
Jingya GuoSchool of Biological Sciences, The University of Manchester, Manchester, UKView further author information
,
Elisabeth A. MuddSchool of Biological Sciences, The University of Manchester, Manchester, UKView further author information
,
Jerry WongSchool of Biological Sciences, The University of Manchester, Manchester, UKView further author information
,
Jean-Marc SchwartzSchool of Biological Sciences, The University of Manchester, Manchester, UKView further author information
&
Anil DaySchool of Biological Sciences, The University of Manchester, Manchester, UKCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0001-7835-9572View further author information
ORCID Icon
Pages 253-255 | Received 04 Oct 2018, Accepted 03 Nov 2018, Published online: 13 Jan 2019

References

  • Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, et al. 2018. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnol. 36:566–569.
  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Computational Biol. 19:455–477.
  • Bendif E, Probert I, Schroeder DC, de Vargas C. 2013. On the description of Tisochrysis lutea gen. nov. sp. nov. and Isochrysis nuda sp. nov. in the Isochrysidales, and the transfer of Dicrateria to the Prymnesiales (Haptophyta). J Appl Phycol. 25:1763–1776.
  • Carrier G, Baroukh C, Rouxel C, Duboscq-Bidot L, Schreiber N, Bougaran G. 2018. Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value. Algal Res. 29:1–11.
  • Darling ACE, Mau B, Blattner FR, Perna NT. 2004. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14:1394–1403.
  • Day A, Goldschmidt-Clermont M. 2011. The chloroplast transformation toolbox: selectable markers and marker removal. Plant Biotechnol J. 9:540–553.
  • Day A, Madesis P. 2007. DNA replication, recombination, and repair in plastids. In: Bock R, editor. Cell and molecular biology of plastids. Vol 19. Topics in current genetics. Berlin, Germany: Springer-Verlag Berlin, Heidelberger; p. 65–119.
  • Duerr EO, Molnar A, Sato V. 1998. Cultured microalgae as aquaculture feeds. J Mar Biotechnol. 6:65–70.
  • Douglas SE, Penny SL. 1999. The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae. J Mol Evol. 48:236–244.
  • Edvardsen B, Eikrem W, Green JC, Andersen RA, Moon-van der Staay SY, Medlin LK. 2000. Phylogenetic reconstructions of the Haptophyta inferred from 18S ribosomal DNA sequences and available morphological data. Phycologia. 39:19–35.
  • Hovde BT, Starkenburg SR, Hunsperger HM, Mercer LD, Deodato CR, Jha RK, Chertkov O, Monnat RJ, Cattolico RA. 2014. The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles. BMC Genomics. 15:604.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol and Evol. 30:772–780.
  • Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucl Acids Res. 32:11–16.
  • Puerta MVS, Bachvaroff TR, Delwiche CF. 2005. The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes. DNA Res. 12:151–156.
  • Reith M, Munholland J. 1993. The ribosomal RNA repeats are non-identical and directly oriented in the chloroplast genome of the red alga Porphyra purpurea. Current Genet. 24:443–450.
  • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 10:512–526.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.