803
Views
2
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete mitochondrial genome of a European fire-bellied toad (Bombina bombina) from Germany

, , &
Pages 498-500 | Received 08 Oct 2018, Accepted 02 Nov 2018, Published online: 14 Jan 2019

References

  • Arntzen JW. 1978. Some hypotheses on postglacial migrations of the fire-bellied Toad, Bombina bombina (Linnaeus) and the yellow-bellied Toad, Bombina variegata (Linnaeus). J Biogeogr. 5:339–345.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol Phylogenet Evol. 69:313–319.
  • Beutler A, Geiger A, Kornacker PM, Kühnel KD, Laufer H, Podloucky R, Boye P, Dietrich E. 1998. Rote Liste der Kriechtiere (Reptilia) und Rote Liste der Lurche (Amphibia.). Rote Liste Gefährdeter Tiere Deutschlands Schriftenreihe Für Landschaftspflege Und Naturschutz. 55:48–52.
  • Dolgener N, Schröder C, Schneeweiss N, Tiedemann R. 2012. Genetic population structure of the Fire-Bellied toad Bombina Bombina in an area of high population density: implications for conservation. Hydrobiologia. 689:111–120.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach. Nucleic Acids Res. 41:e129.
  • Hofman S, Spolsky C, Uzzell T, Cogălniceanu D, Babik W, Szymura JM. 2007. Phylogeography of the Fire-Bellied toads Bombina: independent Pleistocene histories inferred from mitochondrial genomes. Mol Ecol. 16:2301–2316.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28:1647–1649.
  • Kuzmin SL, Pupina A, Pupins M, Trakimas G. 2008. Northern border of the distribution of the red-bellied toad (Bombina Bombina). Zeitschrift Für Feldherpetologie. 15:215–228.
  • Martin M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 17:10–12.
  • Pabijan M, Wandycz A, Hofman S, Węcek K, Piwczyński M, Szymura JM. 2013. Complete mitochondrial genomes resolve phylogenetic relationships within Bombina (Anura: Bombinatoridae). Mol Phylogenet Evol. 69:63–74.
  • Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics. 27:863–864.
  • Schröder C, Pokorny I, Dolgener N, Herden C, Drews H, Tiedemann R. 2012. Allochthonous individuals in managed populations of the fire-bellied toad Bombina Bombina: genetic detection and conservation implications. Limnologica. 42:291–298.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Thompson JD, Gibson TJ, Higgins DG. 2002. Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics.