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Mitogenome Announcement

The complete chloroplast genome of Dipelta yunnanensis (Caprifoliaceae), a vulnerable plant in China

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Pages 515-516 | Received 27 Oct 2018, Accepted 18 Nov 2018, Published online: 12 Jan 2019

References

  • Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Müller WE, Wetter T, Suhai S. 2004. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res. 14:1147–1159.
  • Christenhusz MJM. 2013. Twins are not alone: a recircumscription of Linnaea (Caprifoliaceae). Phytotaxa. 125:25–32.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads: a baiting and iterative mapping approach. Nucleic Acids Res. 41:e129.
  • Katoh K, Standley DM. 2016. A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinformatics. 32:1933–1942.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxt S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28:1647–1649.
  • Liu ZL, Tian P, Li JF, Guo C, Biffin E. 2013. A comparison of DNA sequences, SSR and AFLP for systematic study of Dipelta (caprifoliaceae). Ann Bot Fenn. 50:351–359.
  • Patel RK, Jain M. 2012. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS ONE. 7:e30619
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.
  • Wang GQ. 2014. National compilation of Chinese herbal medicine. Beijing (BJ): People's Health Press.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20:3252–3255.
  • Yang Q, Landrein S. 2011. Flora of China. Vol. 19, Linnaeaceae. Beijing: Science Press, and St. Louis: Missouri Botanical Garden Press.