Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 4, 2019 - Issue 1
Submit an article Journal homepage
1,099
Views
18
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome of ornamental coffee tree, Coffea arabica L. (Rubiaceae)

Jongsun ParkInfoBoss Co., Ltd., Seoul, Republic of Korea;;InfoBoss Research Center, Seoul, Republic of KoreaCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0003-0786-4701View further author information
ORCID Icon,
Yongsung KimInfoBoss Co., Ltd., Seoul, Republic of Korea;;InfoBoss Research Center, Seoul, Republic of KoreaORCID Iconhttp://orcid.org/0000-0002-5349-9226View further author information
ORCID Icon,
Hong XiInfoBoss Co., Ltd., Seoul, Republic of Korea;;InfoBoss Research Center, Seoul, Republic of KoreaView further author information
&
Kyeong-In HeoInfoBoss Co., Ltd., Seoul, Republic of Korea;;InfoBoss Research Center, Seoul, Republic of KoreaORCID Iconhttp://orcid.org/0000-0002-6951-8102View further author information
ORCID Icon
Pages 1059-1060 | Received 10 Jan 2019, Accepted 10 Feb 2019, Published online: 05 Mar 2019

References

  • Bentley JW, Baker PS. 2000. The Colombian Coffee Growers' Federation: organised, successful smallholder farmers for. London: ODI.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
  • Lashermes P, Combes M-C, Robert J, Trouslot P, D'Hont A, Anthony F, Charrier A. 1999. Molecular characterisation and origin of the Coffea arabica L. genome. Mol Gen Genet. 261:259–266.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. Quantitative Biol. arXiv Preprint:1303.3997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • O'brien TG, Kinnaird MF. 2003. Caffeine and conservation. Bogor (Indonesia): American Association for the Advancement of Science.
  • Park J, Kim Y, Xi H, Nho M, Woo J, Seo Y. The complete chloroplast genome of cold hardiness individual of Coffea arabica L. (Rubiaceae). Mitochondrial DNA Part B (Accepted).
  • Park J, Kim Y, Xi H, Nho M, Woo J, Seo Y. The complete chloroplast genome of high production individual tree of Coffea arabica L. (Rubiaceae). Mitochondrial DNA Part B (Accepted).
  • Samson N, Bausher MG, Lee SB, Jansen RK, Daniell H. 2007. The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms. Plant Biotechnol J. 5:339–353.
  • Wellman FL. 1961. Coffee: botany, cultivation, and utilization. London: L. Hill.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12:S2.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.