http://orcid.org/0000-0001-9729-1972
References
- Barrett CF, Freudenstein JV, Li J, Mayfield-Jones DR, Perez L, Pires JC, Santos C. 2014. Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic Orchids, and implications for heterotrophic angiosperms. Mol Biol Evol. 31:3095–3112.
- Beier BA, Chase MW, Thulin M. 2003. Phylogenetic relationships and taxonomy of subfamily Zygophylloideae (Zygophyllaceae) based on molecular and morphological data. Plant Syst Evol. 240:11–39.
- Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST plus: architecture and applications. BMC Bioinformatics. 10:421.
- Feng YL, Wicke S, Li JW, Han Y, Lin CS, Li DZ, Zhou TT, Huang WC, Huang LQ, Jin XH. 2016. Lineage-specific reductions of plastid genomes in an Orchid tribe with partially and fully mycoheterotrophic species. Genome Biol Evol. 8:2164–2175.
- Ge XJ, Hwang CC, Liu ZH, Huang CC, Huang WH, Hung KH, Wang WK, Chiang TY. 2011. Conservation genetics and phylogeography of endangered and endemic shrub Tetraena mongolica (Zygophyllaceae) in Inner Mongolia, China. BMC Genet. 12:1.
- Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, Louisiana, USA. 1–8.
- Patel RK, Jain M. 2012. NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 7:e30619.
- Qin H, Zhao L, Yu S, Liu H, Liu B, Xia N, Peng H, Li Z, Zhang Z, He X. 2017. Evaluating the endangerment status of china’s angiosperms through the red list assessment. Biodiversity Sci. 25:745–757.
- Sanderson MJ, Copetti D, Búrquez A, Bustamante E, Charboneau JL, Eguiarte LE, Kumar S, Lee HO, Lee J, McMahon M, et al. 2015. Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): loss of the ndh gene suite and inverted repeat. Am J Bot. 102:1115–1127.
- Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
- Stevens PF. 2018. Angiosperm Phylogeny Website. Version 14. http://www.mobot.org/MOBOT/research/APweb/
- Wang G, Lin QQ, Xu Y. 2007. Tetraena mongolica Maxim can accumulate large amounts of triacylglycerol in phloem cells and xylem parenchyma of stems. Phytochemistry. 68:2112–2117.
- Wicke S, Muller KF, de Pamphilis CW, Quandt D, Wickett NJ, Zhang Y, Renner SS, Schneeweiss GM. 2013. Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape Family. Plant Cell. 25:3711–3725.
- Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20:3252–3255.
- Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.