599
Views
4
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome of Potentilla stolonifera var. quelpaertensis Nakai

ORCID Icon, ORCID Icon, ORCID Icon & ORCID Icon
Pages 1289-1291 | Received 22 Jan 2019, Accepted 10 Feb 2019, Published online: 23 Mar 2019

References

  • Asker S. 1978. Pseudogamy, hybridization and evolution in Potentilla. Hereditas. 87(2), 179–813.
  • Cheng H, Li J, Zhang H, Cai B, Gao Z, Qiao Y, Mi L. 2017. The complete chloroplast genome sequence of strawberry (Fragaria × ananassa Duch.) and comparison with related species of Rosaceae. PeerJ. 5:e3919
  • Eriksen B. 1996. Mating systems in two species of Potentilla from Alaska. Folia Geobot. 31:333–344.
  • Eriksson T, Donoghue MJ, Hibbs MS. 1998. Phylogenetic analysis of Potentilla using DNA sequences of nuclear ribosomal internal transcribed spacers (ITS), and implications for the classification of Rosoideae (Rosaceae). Plant System Evol. 211:155–179.
  • Ferrarini M, Moretto M, Ward JA, Šurbanovski N, Stevanović V, Giongo L, Viola R, Cavalieri D, Velasco R, Cestaro A, Sargent DJ. 2013. An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome. BMC Genom. 14:670.
  • Heo K-I. 2009. A systematic study of genus Potentilla s.l. in Korea (Rosaceae). Suwon, Korea: Sungkyunkwan University.
  • Heo et al. under revision. Taxonomic studies of the tribe Potentilleae (Rosaceae) in Korea.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. Quant Biol. arXiv:13033997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Nakai T. 1914. LIX. Plantae novae Coreanae et Japonicae. II. Fedde Repert Spec Nov Regni Veg. 13:275.
  • Soják J. 1985. Notes on Potentilla: 1. Hybridogenous species derived from intersectional hybrids of sect. Niveae × Sect. Multifidae. Bot Jahrb Syst. 106:145–210.
  • Soják J. 2004. Potentilla L.(Rosaceae) and related genera in the former USSR (identification key, checklist and figures) notes on Potentilla XVI. Bot Jahrb Syst. 125:253–340.
  • Soják J. 2008. Notes on Potentilla XXI. A new division of the tribe Potentilleae (Rosaceae) and notes on generic delimitations. Bot Jahrb Syst. 127:349–358.
  • Yang JY, Pak J-H, Kim S-C. 2017. The complete chloroplast genome sequence of Korean raspberry Rubus crataegifolius (Rosaceae). Mitochondrial DNA B. 2:793–794.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhang SD, Jin JJ, Chen SY, Chase MW, Soltis DE, Li HT, Yang JB, Li DZ, Yi TS. 2017. Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics. New Phytologist. 214:1355–1367.
  • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12:S2.
  • Zhao Y, Lu D, Han R, Wang L, Qin P. 2018. The complete chloroplast genome sequence of the shrubby cinquefoil Dasiphora fruticosa (Rosales: Rosaceae). Conserv Genet Resour. 10:675–678.