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Mito Communication

Next-generation sequencing yields the complete chloroplast genome of Abies fargesii

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Pages 1273-1274 | Received 24 Jan 2019, Accepted 02 Mar 2019, Published online: 23 Mar 2019

References

  • Farjon A. 1990. Pinaceae: drawings and descriptions of the genera Abies, Cedrus, Pseudolarix, Keteleeria, Nothotsuga, Tsuga, Cathaya, Pseudotsuga, Larix and Picea (Regnum Vegetabile 121). Königstein: Koeltz Scientific Books; p. 9–109.
  • Farjon A. 2001. World checklist and bibliography of conifers, 2nd ed. London: The Royal Botanic Gardens, Kew.
  • Fu LG, Li N, Elias TS. 1999. Pinaceae. In: Wu Z, Raven PH, editors. Flora of China. Vol. 4. Beijing: Science Press; p. 15–90.
  • Liu TS. 1971. A monograph of the genus Abies. Taiwan: Department of Forestry, College of Agriculture, National Taiwan University.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES science gateway for inference of large phylogenetic trees. In: Proceedings of the gateway computing environments workshop (GCE). New Orleans, LA, USA: IEEE. doi:10.1109/GCE.2010.5676129
  • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572–1574.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61:539–542.
  • Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan, and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686–W689.
  • Shao YZ, Hu JT, Fan PZ, Liu YY, Wang YH. 2018. The complete chloroplast genome sequence of Abies beshanzuensis, a highly Endangered fir species from south China. Mitochondrial DNA B. 3:923–924.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45:W6–W11.
  • Yi DK, Yang JC, So S, Joo MJ, Kim DK, Shin CH, Lee YM, Choi K. 2015. The complete plastid genome sequence of Abies koreana (Pinaceae: Abietoideae). Mitochondrial DNA. 27:1.