675
Views
7
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome of new variety candidate in Korea, Potentilla freyniana var. chejuensis (Rosoideae)

ORCID Icon, ORCID Icon & ORCID Icon
Pages 1354-1356 | Received 13 Feb 2019, Accepted 13 Mar 2019, Published online: 03 Apr 2019

References

  • Cheng H, Li J, Zhang H, Cai B, Gao Z, Qiao Y, Mi L. 2017. The complete chloroplast genome sequence of strawberry (Fragaria x ananassa Duch.) and comparison with related species of Rosaceae. PeerJ. 5:e3919.
  • Dobeš C, Paule J. 2010. A comprehensive chloroplast DNA-based phylogeny of the genus Potentilla (Rosaceae): implications for its geographic origin, phylogeography and generic circumscription. Mol Phylogenet Evol. 56:156–175.
  • Ferrarini M, Moretto M, Ward JA, Šurbanovski N, Stevanović V, Giongo L, Viola R, Cavalieri D, Velasco R, Cestaro A, et al. 2013. An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome. BMC Genom. 14:670.
  • Heo KI, Kim Y, Maki M, Park J. 2019. The complete chloroplast genome of mock strawberry, Duchesnea indica (Andrews) Th. Wolf (Rosoideae). Mitochondrial DNA B. 4:560–562.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kim CS. 2009. Vascular plant diversity of Jeju island, Korea. Korean J Plant Resour. 22:558–570.
  • Kong WS, Kim K, Lee S, Park H, Cho SH. 2014. Distribution of high mountain plants and species vulnerability against climate change. J Environ Impact Assess. 23:119–136.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
  • Lee TB. 1985. Endemic and rare plants of Mt. Halla.
  • Li C, Ikeda H, Ohba H, Zhengyi W, Raven P, Hong D. 2003. Potentilla L. Flora Chin. 9:291–328.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv Preprint arXiv. 13033997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Nakai T. 1914. Flora of Quelpaert and Wando Island. Seoul, South Korea: Govern Chosen.
  • Naruhashi N. 2003. Rosoideae in Flora of Japan. Vol. IIb. Tokyo, Japan: Kodansha.
  • Park J, Heo KI, Kim Y, Kwon W. 2019. The complete chloroplast genome of Potentilla centigrana Maxim. (Rosaceae). Mitochondrial DNA B. 4:688–689.
  • Park J, Kim Y, Lee K. 2019. The complete chloroplast genome of Korean mock strawberry, Duchesnea chrysantha (Zoll. & Moritzi) Miq. (Rosoideae). Mitochondrial DNA B. 4:864–865.
  • Soják J. 2008. Notes on Potentilla XXI. A new division of the tribe Potentilleae (Rosaceae) and notes on generic delimitations. Bot Jahrb. 127:349–358.
  • Yang JY, Pak JH, Kim SC. 2017. The complete chloroplast genome sequence of Korean raspberry Rubus crataegifolius (Rosaceae). Mitochondrial DNA B. 2:793–794.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genom Res. 18:821–829.
  • Zhang SD, Jin JJ, Chen SY, Chase MW, Soltis DE, Li HT, Yang JB, Li DZ, Yi TS. 2017. Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics. New Phytologist. 214:1355–1367.
  • Zhao QY, Wang Y, Kong YM, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12:S2.
  • Zhao Y, Lu D, Han R, Wang L, Qin P. 2018. The complete chloroplast genome sequence of the shrubby cinquefoil Dasiphora fruticosa (Rosales: Rosaceae). Conserv Genet Resour. 10:675–678.