References
- Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
- Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
- Lu SG, Li CX. 2006. Phylogenetic position of the monotypic genus Metapolypodium Ching endemic to Asia: evidence from chloroplast DNA sequences of rbcL gene and rps4-trnS region. Acta Phytotaxon Sin. 44:494–502.
- National Pharmacopoeia Committee. 2010. Pharmacopoeia of People’s Republic of China. Beijing (China): Chemical Industry Press.
- Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686–W689.
- Schneider H, Smith AR, Cranfill R, Hildebrand TJ, Haufler CH, Ranker TA. 2004. Unraveling the phylogeny of polygrammoid ferns (Polypodiaceae and Grammitidaceae): exploring aspects of the diversification of epiphytic plants. Mol Phylogenet Evol. 31:1041–1063.
- Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
- Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20:3252–3255.
- Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
- Zhang XC, Lu SG, Lin YX, Qi XP, Moore S, Xing FW, Wang FG, Hovenkamp PH, Gilbert MG, Nooteboom HP, et al. 2013. Polypodiaceae. In: Wu ZY, Raven PH, Hong DY, editors. Flora of China. Vol. 2–3 (Pteridophytes). Beijing (China): Science Press; p. 758–850.