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Mitogenome Announcement

The complete chloroplast genome of Selaginella tamariscina (Beauv.) Spring (Selaginellaceae) isolated in Korea

ORCID Icon, ORCID Icon, & ORCID Icon
Pages 1654-1656 | Received 03 Jan 2020, Accepted 07 Jan 2020, Published online: 31 Mar 2020

References

  • Cheng X-L, Ma S-C, Yu J-D, Yang S-Y, Xiao X-Y, Hu J-Y, Lu Y, Shaw P-C, But PP-H, Lin R-C. 2008. Selaginellin A and B, two novel natural pigments isolated from Selaginella tamariscina. Chem Pharm Bull. 56(7):982–984.
  • Cho MS, Kim Y, Kim SC, Park J. 2019. The complete chloroplast genome of Korean Pyrus ussuriensis Maxim.(Rosaceae): providing genetic background of two types of P. ussuriensis. Mitochondrial DNA Part B. 4(2):2424–2425.
  • Dai Y, But PP-H, Chu L-M, Chan Y-P. 2005. Inhibitory effects of Selaginella tamariscina on immediate allergic reactions. Am J Chin Med. 33(6):957–966.
  • Giarola V, Hou Q, Bartels D. 2017. Angiosperm plant desiccation tolerance: hints from transcriptomics and genome sequencing. Trend Plant Sci. 22(8):705–717.
  • Jansen RK, Cai Z, Raubeson LA, Daniell H, Depamphilis CW, Leebens-Mack J, Müller KF, Guisinger-Bellian M, Haberle RC, Hansen AK. 2007. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci. 104(49):19369–19374.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Kwon W, Kim Y, Park J. 2019. The complete mitochondrial genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: inverted repeats on mitochondrial genome between Korean and Japanese isolates. Mitochondr DNA B. 4(1):769–770. DOI:10.1080/23802359.2019.1565975
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv Preprint arXiv. :13033997.
  • Li H, 1000 Genome Project Data Processing Subgroup, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079.
  • Oh S-H, Suh HJ, Park J, Kim Y, Kim S. 2019a. The complete chloroplast genome sequence of a morphotype of Goodyera schlechtendaliana (Orchidaceae) with the column appendages. Mitochondr DNA B. 4(1):626–627.
  • Oh S-H, Suh HJ, Park J, Kim Y, Kim S. 2019b. The complete chloroplast genome sequence of Goodyera schlechtendaliana in Korea (Orchidaceae). Mitochondr DNA B. 4(2):2692–2693.
  • Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019. The complete chloroplast genome of common camellia tree, Camellia japonica L.(Theaceae), adapted to cold environment in Korea. Mitochondr DNA B. 4(1):1038–1040.
  • Park J, Suh Y, Kim S. 2020. A complete chloroplast genome sequence of Gastrodia elata (Orchidaceae) represents high sequence variation in the species. DOI:10.1080/23802359.2019.1710588
  • Tsuji S, Ueda K, Nishiyama T, Hasebe M, Yoshikawa S, Konagaya A, Nishiuchi T, Yamaguchi K. 2007. The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses. J Plant Res. 120(2):281–290.
  • Xu Z, Xin T, Bartels D, Li Y, Gu W, Yao H, Liu S, Yu H, Pu X, Zhou J, et al. 2018. Genome analysis of the ancient tracheophyte Selaginella tamariscina reveals evolutionary features relevant to the acquisition of desiccation tolerance. Mol Plant. 11(7):983–994.
  • Yang JW, Pokharel YR, Kim M-R, Woo E-R, Choi HK, Kang KW. 2006. Inhibition of inducible nitric oxide synthase by sumaflavone isolated from Selaginella tamariscina. J Ethnopharmacol. 105(1–2):107–113.
  • Yang SF, Chu SC, Liu SJ, Chen YC, Chang YZ, Hsieh YS. 2007. Antimetastatic activities of Selaginella tamariscina (Beauv.) on lung cancer cells in vitro and in vivo. J Ethnopharmacol. 110(3):483–489.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821–829.
  • Zhang H-R, Xiang Q-P, Zhang X-C. 2019. The unique evolutionary trajectory and dynamic conformations of DR and IR/DR-coexisting plastomes of the early vascular plant Selaginellaceae (Lycophyte). Genome Biol Evol. 11(4):1258–1274.
  • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12(Suppl 14):S2.
  • Zheng XK, Li YJ, Zhang L, Feng WS, Zhang X. 2011. Antihyperglycemic activity of Selaginella tamariscina (Beauv.) spring. J Ethnopharmacol. 133(2):531–537.
  • Zheng XK, Zhang L, Wang WW, Wu YW, Zhang QB, Feng WS. 2011. Anti-diabetic activity and potential mechanism of total flavonoids of Selaginella tamariscina (Beauv.) Spring in rats induced by high fat diet and low dose STZ. J Ethnopharmacol. 137(1):662–668.
  • Zhou X-M, Rothfels C J, Zhang L, He Z-R, Le Péchon T, He H, Lu N T, Knapp R, Lorence D, He X-J, et al. 2016. A large‐scale phylogeny of the lycophyte genus Selaginella (Selaginellaceae: Lycopodiopsida) based on plastid and nuclear loci. Cladistics. 32(4):360–389.