References
- Balakumbahan R, Rajamani K, Kumanan K. 2010. Acorus calamus: an overview. J Med Plant Res. 4:2740–2745.
- Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
- Givnish T J, Zuluaga A, Spalink D, Soto Gomez M, Lam V K. Y, Saarela J M, Sass C, Iles W J. D, de Sousa D J L, Leebens-Mack J, et al. 2018. Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi‐gene analyses, and a functional model for the origin of monocots. Am J Bot. 105(11):1888–1910.
- Goremykin VV, Holland B, Hirsch-Ernst KI, Hellwig FH. 2005. Analysis of Acorus calamus chloroplast genome and its phylogenetic implications. Mol Biol Evol. 22(9):1813–1822.
- Govaerts R, Frodin DG. 2002. World checklist and bibliography of Araceae. Kew: Royal Botanical Gardens.
- Jin JJ, Yu WB, Yang JB, Song Y, Yi TS, Li DZ. 2018. GetOrganelle: a simple and fast pipeline for de novo assembly of a complete circular chloroplast genome using genome skimming data. bioRxiv. 256479. doi:10.1101/256479
- Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
- Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649.
- Lohse M, Drechsel O, Kahlau S, Bock R. 2013. OrganellarGenomeDRAW – a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucleic Acids Res. 41(W1):W575–W581.
- Motley TJ. 1994. The ethnobotany of sweet flag, Acorus calamus (Araceae). Econ Bot. 48(4):397–412.
- Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
- Wick RR, Schultz MB, Zobel J, Holt KE. 2015. Bandage: interactive visualization of de novo genome assemblies. Bioinformatics. 31(20):3350–3352.
- Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20(17):3252–3255.