Mitochondrial DNA diversity in wild gaur (Bos gaurus gaurus): evidence from extant and historical samples

References

• Ahrestani FS, Karanth KU. 2014. Gaur Bos gaurus. In: Melletti M, Burton J, editors. Ecology, evolution and behaviour of wild cattle: implications for conservation. Cambridge: Cambridge University Press; p. 174–193.
   Google Scholar
• Allchin B, Allchin FR. 1997. Origins of a civilization: the prehistory and early archaeology of South Asia. New York: Viking.
   Google Scholar
• Asher RJ, Hofreiter M. 2006. Tenrec phylogeny and the noninvasive extraction of nuclear DNA. Syst Biol. 55(2):181–194.
   PubMed Web of Science ®Google Scholar
• Barlow J, França F, Gardner TA, Hicks CC, Lennox GD, Berenguer E, Castello L, Economo EP, Ferreira J, Guénard B, et al. 2018. The future of hyperdiverse tropical ecosystems. Nature. 559(7715):517–526.
   PubMed Web of Science ®Google Scholar
• Basu A, Mukherjee N, Roy S, Sengupta S, Banerjee S, Chakraborty M, Dey B, Roy M, Roy B, Bhattacharyya NP, et al. 2003. Ethnic India: a genomic view, with special reference to peopling and structure. Genome Res. 13(10):2277–2290.
   PubMed Web of Science ®Google Scholar
• Cadahía L, Negro JJ, Urios V. 2007. Low mitochondrial DNA diversity in the endangered Bonelli’s Eagle (Hieraaetus fasciatus) from SW Europe (Iberia) and NW Africa. J Ornithol. 148:99.
   Web of Science ®Google Scholar
• Chaubey G, Metspalu M, Kivisild T, Villems R. 2007. Peopling of South Asia: investigating the caste-tribe continuum in India. Bioessays. 29(1):91–100.
   PubMed Web of Science ®Google Scholar
• Costa V, Rosenbom S, Monteiro R, Rourke SMO, Pereira A. 2016. Improving DNA quality extracted from fecal samples—a method to improve DNA yield. Eur J Wildl Res. 63:3.
   Web of Science ®Google Scholar
• Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. MolBiolEvol. 29:1969–1973.
   Google Scholar
• Fardila D, Kelly LT, Moore JL, McCarth MA. 2017. A systematic review reveals changes in where and how we have studied habitat loss and fragmentation over 20 years. Biol Conserv. 212:130–138.
   Web of Science ®Google Scholar
• Fuller DQ. 2007. Non-human genetics, agricultural origins and historical linguistics in South Asia. In: Petraglia MD, Allchin B, editors. The evolution and history of human populations in South Asia. New York: Springer; p. 393–443.
   Google Scholar
• Gautam R. 2011. Baigas: the hunter gatherers of central India. New Delhi (India): Readworthy Publications (P) Ltd.
   Google Scholar
• Gordon IJ, Hester AJ, Bianchet FM. 2004. The management of wild large herbivores to meet economic, conservation and environmental objectives. J Appl Ecol. 41(6):1021–1031.
   Web of Science ®Google Scholar
• Karanth KU, Kumar NS. 2005. Distribution and dynamics of tiger and prey populations in Maharashtra, India. Final technical report. Bangalore (India): Centre for Wildlife Studies.
   Google Scholar
• Kearney M, Stuart BL. 2004. Repeated evolution of limblessness and digging heads in worm lizards revealed by DNA from old bones. Proc R Soc Lond B. 271(1549):1677–1683.
   PubMed Web of Science ®Google Scholar
• Khaire D, Atkulwar A, Farah S, Baig M. 2016. Mitochondrial DNA analyses revealed low genetic diversity in the endangered Indian wild ass Equus hemionus khur. Mitochondrial DNA A. 12:1–6.
   Google Scholar
• Koressaar T, Remm M. 2007. Enhancements and modifications of primer design program Primer3. Bioinformatics. 23(10):1289–1291.
   PubMed Web of Science ®Google Scholar
• Kumar S, Padmanabham PB, Ravuri RR, Uttaravalli K, Koneru P, Mukherjee PA, Das B, Kotal M, Xaviour D, Saheb SY, et al. 2008. The earliest settler’s antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage. BMC Evol Biol. 8(1):230.
   PubMed Web of Science ®Google Scholar
• Librado P, Rozas J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25(11):1451–1452.
   PubMed Web of Science ®Google Scholar
• Loreille OM, Diegoli TM, Irwin JA, Coble MD, Parsons TJ. 2007. High efficiency DNA extraction from bone by total demineralization. Forensic Sci Int Genet. 1(2):191–195.
   PubMed Web of Science ®Google Scholar
• Majumder PP. 2001. Ethnic populations of India as seen from an evolutionary perspective. J Biosci. 26(4):533–545.
   PubMed Web of Science ®Google Scholar
• Matata AC, Adan A. 2018. Causes of climate change and its impact in the multi-sectoral areas in Africa-need for enhanced adaptation policies. CJAST. 27(3):1–10.
   Google Scholar
• Mattson DJ. 1997. Use of ungulates by Yellowstone grizzly bears Ursus arctos. Biol Conserv. 81(1–2):161–177.
   Web of Science ®Google Scholar
• McNaughton SJ. 1979. Grazing as an optimization process grass ungulate relationships in the Serengeti. Am Nat. 113(5):691–703.
   Web of Science ®Google Scholar
• Md-Zain BM, Abdul-Aziz A, Aifat NR, Mohd-Yusof NS, Norsyamimi R, Rovie-Ryan JJ, Karuppannan KV, Zulkifli NA YS. 2018. Sequence variation of captive Malayan gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences. Biodiversitas. 19(5):1601–1606.
   Google Scholar
• Mondol S, Karanth KU, Ramakrishnan U. 2009. Why the Indian subcontinent holds the key to Global Tiger Recovery. PLOS Genet. 5(8):e1000585.
   PubMed Web of Science ®Google Scholar
• Nichols RV, Cromsigt JGM, Spong G. 2015a. Using eDNA to experimentally test ungulate browsing preferences. Springerplus. 4:489.
   PubMedGoogle Scholar
• Nichols RV, Cromsigt JGM, Spong G. 2015b. DNA left on browsed twigs uncovers bite-scale resource use patterns in European ungulates. Oecologia. 178(1):275–284.
   PubMed Web of Science ®Google Scholar
• Nichols RV, Königsson H, Danell K, Spong G. 2012. Browsed twig environmental DNA: diagnostic PCR to identify ungulate species. MolEcol Res. 12:983–989.
   PubMed Web of Science ®Google Scholar
• Payne RB, Sorenson MD. 2002. Museum collections as sources of genetic data. Bonner ZoologischeBeiträge. 51:97–104.
   Google Scholar
• Rangarajan M. 2006. India’s wildlife history: an introduction. Bangalore: Orient Longman.
   Google Scholar
• Rosli MKA, Zakaria SS, Syed-Shabthar SMF, Zainal ZZ, Shukor MN, Mahani MC, Abas-Mazni O, Md-Zain BM. 2011. Phylogenetic relationships of Malayan gaur with other species of the genus Bos based on cytochrome b gene DNA sequences. Genet Mol Res. 10(1):482–493.
   PubMed Web of Science ®Google Scholar
• Sharma S, Dutta T, Maldonado JE, Wood TC, Panwar HS, Seidensticker J. 2013. Spatial genetic analysis reveals high connectivity of tiger (Panthera tigris) populations in the Satpura-Maikal landscape of Central India. Ecol Evol. 3(1):48–60.
   Web of Science ®Google Scholar
• Sonwa DJ, Dieye A, Mzouri EH, Majule A, Mugabe FT, Omolo N, Wouapi H, Obando J, Brooks N. 2017. Drivers of Climate Risk in African Agriculture. Climate Dev. 9(5):383–398.
   Web of Science ®Google Scholar
• Tsangaras K, Ávila-Arcos MC, Ishida Y, Helgen KM, Roca AL, Greenwood AD. 2012. Historically low mitochondrial DNA diversity in koalas (Phascolarctos cinereus). BMC Genet . 13(1):92.
   PubMed Web of Science ®Google Scholar
• Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG. 2012. Primer3 - new capabilities and interfaces. Nucleic Acids Res. 40(15):e115–e115.
   PubMed Web of Science ®Google Scholar