587
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Characterization of the complete chloroplast genome of Clinopodium chinense (Labiatae), a medicinal plant in southwest of China

, &
Pages 1491-1493 | Received 26 Feb 2020, Accepted 08 Mar 2020, Published online: 20 Mar 2020

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Doyle J. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47:59–64.
  • Israili ZH, Lyoussi B. 2009. Ethnopharmacology of the plants of genus Ajuga. Pak J Pharm Sci. 22(4):425–462.
  • Minru J, Yi Z. 2016. Dictionary of Chinese ethnic medicine. Beijing: China Medical Science and Technology Press.
  • Jiangsu New Medical College. 1977. Dictionary of Chinese materia medical (In Chinese). Shanghai: Science and Technology Press of Shanghai.
  • Jin JJ, Yu WB, Yang JB, Song Y, Yi TS, Li DZ. 2018. GetOrganelle: a simple and fast pipeline for de novo assembly of a complete circular chloroplast genome using genome skimming data. bioRxiv. :1–11.
  • Katoh K, Standley D. 2013. MAFFT multiple sequence alignment software version improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874.
  • Li HW, Ian CH. 1994. Clinopodium. In: Wu ZY, Raven PH, editors. Flora of China. 17th ed). Beijing: Science Press.
  • Ling-Tian W, Zhong-Hao S, Ming-Liang Z, Hai-Feng W, Hai-Jing Z, Nai-Liang Z. 2017. Studies on chemical constituents of Clinopodium chinense. China J Chin Mater Med. 42(13):2510–2517.
  • Lowe TM, Chan PP. 2016. tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes. Nucleic Acids Res. 44(W1):W54–57.
  • Xiaoji S, Shanshan W, Huiling L, Dina T, Yining L, Jingyu L, Yi X, Liangyou R, Feihua W. 2019. Clinopodium chinense attenuates palmitic acid-induced vascular endothelial inflammation and insulin resistance through TLR4-mediated NF-κB and MAPK pathways. Am J Chin Med. 47(1):79–117.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20(17):3252–3255.
  • Yang JB, Li DZ, Li HT. 2014. Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs. Mol Ecol Resour. 14:1024–1031.
  • Yingli Y, Na X, Xudong X, Yindi Z, Shan W, Guibo S, Xiaobo S. 2019. Tournefolic acid B, derived from Clinopodium chinense (Benth.) Kuntze, protects against myocardial ischemia/reperfusion injury by inhibiting endoplasmic reticulum stress-regulated apoptosis via PI3K/AKT pathways. Phytomed Int J Phytother Phytopharmacol. 52:178–186.
  • Zhu Y-D, Chen R-C, Wang H, Jiang H, Huang X-L, Zhang M-L, Li L-Y, Hu Z, Xu X-D, Wang C-J, et al. 2018. Two new flavonoid–triterpene saponin meroterpenoids from Clinopodium chinense and their protective effects against anoxia/reoxygenation-induced apoptosis in H9c2 cells. Fitoterapia. 128:180–186.