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Mitochondrial DNA Part B
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Volume 5, 2020 - Issue 2
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Mitogenome Announcement

Complete mitochondrial genome of the freshwater water flea Daphnia magna NIES strain (Cladocera, Daphniidae): Rearrangement of two ribosomal RNA genes

Jin-Sol LeeDepartment of Biological Sciences, College of Science, Sungkyunkwan University, Suwon, South Korea; ;Department of Biotechnology, Division of Advance Science and Biotechnology, Graduate School of Engineering, Osaka University, Suita, Japan; View further author information
,
Duck-Hyun KimDepartment of Biological Sciences, College of Science, Sungkyunkwan University, Suwon, South Korea; View further author information
,
Beom-Soon ChoiPhyzen Genomics Institute, Seongnam, South KoreaView further author information
,
Yasuhiko KatoDepartment of Biotechnology, Division of Advance Science and Biotechnology, Graduate School of Engineering, Osaka University, Suita, Japan; View further author information
,
Hajime WatanabeDepartment of Biotechnology, Division of Advance Science and Biotechnology, Graduate School of Engineering, Osaka University, Suita, Japan; View further author information
&
Jae-Seong LeeDepartment of Biological Sciences, College of Science, Sungkyunkwan University, Suwon, South Korea; Correspondence[email protected]
ORCID Iconhttp://orcid.org/0000-0003-0944-5172View further author information
ORCID Icon
Pages 1822-1823 | Received 20 Mar 2020, Accepted 27 Mar 2020, Published online: 13 Apr 2020

References

  • Crease TJ. 1999. The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocera: Crustacea). Gene. 233(1–2):89–99.
  • Ismail NIB, Kato Y, Matsuura T, Watanabe H. 2018. Generation of white-eyed Daphnia magna mutants lacking scarlet function. PLoS One. 13(11):e0205609.
  • Jeong C-B, Choi B-S, Hwang D-S, Choi J, Lee J-S. 2019. Complete mitochondrial genome of the water flea Daphnia magna (Cladocera, Daphniidae). Mitochondrial DNA B. 4(1):1021–1022.
  • Kim D-H, Lee B-Y, Kim H-S, Jeong C-B, Hwang D-S, Kim I-C, Lee J-S. 2018. Identification and characterization of homeobox (Hox) genes and conservation of the single Hox cluster (324.6 kb) in the water flea Daphnia magna. J Exp Zool (Mol Dev Evol). 330(2):76–82.
  • Kotov A, Forró L, Korovchinsky NM, Petrusek A. 2012. Crustacea-Cladocera checklist. World checklist of freshwater Cladocera species. Belgian Biodiversity Platform [cited 2012 Oct 29]. Available from: http://fada.biodiversity.be/group/show/17
  • Kumagai H, Nakanishi T, Matsuura T, Kato Y, Watanabe H. 2017. CRISPR/Cas-mediated knock-in via non-homologous end-joining in the crustacean Daphnia magna. PLoS One. 12(10):e0186112.
  • Lee B-Y, Choi B-S, Kim M-S, Park JC, Jeong C-B, Han J, Lee J-S. 2019. The genome of the freshwater water flea Daphnia magna: a potential use in molecular ecotoxicology. Aquat Toxicol. 210:69–84.
  • Oda S, Tatarazako N, Watanabe H, Morita M, Iguchi T. 2006. Genetic differences in the production of male neonates in Daphnia magna exposed to juvenile hormone analogs. Chemosphere. 63(9):1477–1484.
  • Tokishita SI, Shibuya H, Kobayashi T, Sakamoto M, Ha JY, Yokobori SI, Yamagata H, Hanazato T. 2017. Diversification of mitochondrial genome of Daphnia galeata (Cladocera, Crustacea): Comparison with phylogenetic consideration of the complete sequences of clones isolated from five lakes in Japan. Gene. 611:38–46.
  • Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, et al. 2014. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One. 9(11):e112963.
  • Xu S, Schaack S, Seyfert A, Choi E, Lynch M, Cristescu ME. 2012. High mutation rates in the mitochondrial genomes of Daphnia pulex. Mol Biol Evol. 29(2):763–769.

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