462
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome of Epimedium rhizomatosum (Berberidaceae), an endemic plant species to China

, , , , , , , , & show all
Pages 1886-1887 | Received 12 Feb 2020, Accepted 20 Feb 2020, Published online: 16 Apr 2020

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Doyle J. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Jiang J, Song J, Jia X. 2015. Phytochemistry and ethnopharmacology of Epimedium L. Species. Chin Herb Med. 7(3):204–222.
  • Jin J, Yu W, Yang J, Song Y, Yi T, Li D. 2018. GetOrganelle: a simple and fast pipeline for de novo assembly of a complete circular chloroplast genome using genome skimming data. bioRxiv. 4:256479.
  • Katoh K, Rozewicki J, Yamada KD. 2017. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform. 4:1–7.
  • Liu X, Yang Q, Zhang C, Shen G, Guo B. 2019. The complete chloroplast genome of Epimedium sagittatum (Sieb. Et Zucc.) Maxim. (Berberidaceae), a traditional Chinese herb. Mitochondrial DNA Part B. 4(2):2572–2573.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Zhang Y, Du L, Liu A, Chen J, Wu L, Hu W, Zhang W, Kim K, Lee S, Yang T, et al. 2016. The complete chloroplast genome sequences of five Epimedium species: lights into phylogenetic and taxonomic analyses. Front Plant Sci. 7:306