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Mitogenome Announcement

The complete mitochondrial genome of fungal endosymbiont, Ophiocordycipitaceae sp., isolated from Ricania speculum (Hemiptera: Ricaniidae)

ORCID Icon, , &
Pages 1888-1889 | Received 24 Feb 2020, Accepted 08 Mar 2020, Published online: 16 Apr 2020

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Hongoh Y, Ishikawa H. 2000. Evolutionary studies on uricases of fungal endosymbionts of aphids and planthoppers. J Mol Evol. 51(3):265–277.
  • Joardar V, Abrams NF, Hostetler J, Paukstelis PJ, Pakala S, Pakala SB, Zafar N, Abolude OO, Payne G, Andrianopoulos A, et al. 2012. Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability. BMC Genom. 13(1):698.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Kwon W, Park J, Kim J-B, Park M-J, Kim T-S. 2019. Complete mitochondrial genome sequence of lettuce pathogenic fungus, Fusarium oxysporum f. sp. lactucae 16-086. Mitochondrial DNA Part B. 4(2):3227–3228.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv preprint arXiv:13033997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079.
  • Marshall R, Lester M, Glare T, Christeller J. 2003. The fungus, Lecanicillium muscarium, is an entomopathogen of passionvine hopper (Scolypopa australis). NZ J Crop Hortic Sci. 31(1):1–7.
  • Mueller GM. 2011. Biodiversity of fungi: inventory and monitoring methods. Burlington, MA: Elsevier, Academic Press.
  • Park J, Kwon W, Huang X, Mageswari A, Heo I-B, Han K-H, Hong S-B. 2019. Complete mitochondrial genome sequence of a xerophilic fungus Aspergillus pseudoglaucus. Mitochondrial DNA Part B. 4(2):2422–2423.
  • Simmons DR, Kepler RM, Renner SA, Groden E. 2015. Phylogeny of Hirsutella species (Ophiocordycipitaceae) from the USA: remedying the paucity of Hirsutella sequence data. IMA Fungus. 6(2):345–356.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821–829.
  • Zhang Y-J, Yang X-Q, Zhang S, Humber RA, Xu J. 2017. Genomic analyses reveal low mitochondrial and high nuclear diversity in the cyclosporin-producing fungus Tolypocladium inflatum. Appl Microbiol Biotechnol. 101(23-24):8517–8531.
  • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinf. 12(Suppl 14):S2.