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Rapid Communication

Molecular approach for identification of Catla catla using mitochondrial CO1 from Pakistan

, ORCID Icon, ORCID Icon & ORCID Icon
Pages 3000-3003 | Received 21 Jul 2019, Accepted 09 May 2020, Published online: 25 Jul 2020

References

  • Bhattacharjee MJ, Laskar BA, Dhar B, Ghosh SK. 2012. Identification and re-evaluation of freshwater catfishes through DNA barcoding. PLoS One. 7(11):e49950.
  • Bhuiyan AL. 1964. Fishes of Dacca. Asiatic Soc. Pakistan, Publ. No. 13, Dacca. p. 31.
  • Cawthorn DM, Steinman HA, Witthuhn RC. 2011. Comparative study of different methods for the extraction of DNA from fish species commercially available in South Africa. Food Contl. 22(2):231–244.
  • Consortium for the Barcode of Life (CBOL). 2009. What is DNA barcoding? http://www.barcodeoflife.org/content/about/what-dna-barcoding
  • Dawnay N, Ogden R, McEwing R, Carvalho GR, Thorpe RS. 2007. Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci Int. 173(1):1–6.
  • Hall T. 1999. Bioedit: biological sequence alignment editor and analysis program for Window 95/98/NT. Nucleic Acid Res. 41:95–98.
  • Hamilton B. 1822. Fishes of the Ganges. Edinburgh: Archibald Constable and Company; p. 277.
  • Hajibabaei M, Smith MA, Janzen DH, Rodriguez JJ, Whitfield JB, Hebert P. 2006. A minimalist barcode can identify a specimen whose DNA is degraded. Mol Eco Notes. 6(4):959–964.
  • Hebert PDN, Cywinska A, Ball SL, DeWaard JR. 2003. Biological identifications through DNA barcodes. Proc Biol Sci. 270(1512):313–322.
  • Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM. 2004. Identification of birds through DNA barcodes. PLoS Biol. 2(10):e312.
  • Hubert N, Hanner R, Holm E, Mandrak NE, Taylor E, Burridge M, Watkinson D, Dumont P, Curry A, Bentzen P, et al. 2008. Identifying Canadian freshwater fishes through DNA barcodes. PLoS One. 3(6):e2490.
  • Jhingran VG. 1966. Synopsis of biological data on catla, Catla catla (Hamilton, 1882). FAO Fish. Synop. (32): pag.var.
  • Kenchington EL, Baillie SM, Kenchington TJ, Bentzen P. 2017. Barcoding Atlantic Canada's mesopelagic and upper bathypelagic marine fishes. PLoS One. 12(9):e0185173.
  • Kerr KC, Lijtmaer DOA, Barreira AS, Hebert PD, Tubaro PL. 2009. Probing evolutionary patterns through DNA barcodes. PLoS One. 4(2):e4379.
  • Kerr KCR, Stoeckle MY, Dove CJ, Weigt LA, Francis CM, Hebert PDN. 2007. Comprehensive DNA barcode coverage of North American birds. Mol Eco Notes. 7(4):535–543.
  • Li Y, Zhang Z, Yang J, Lv G. 2018. Complete chloroplast genome of seven Fritillaria species, variable DNA markers identification and phylogenetic relationships within the genus. PLoS One. 13(3):e0194613.
  • Lohman DJ, Prawiradilaga DM, Meier R. 2009. Improved COI barcoding primers for Southeast Asian perching birds (Aves: Passeriformes). Mol Ecol Resour. 9(1):37–40.
  • Lukhtanov V, Sourakov A, Zakharov EV, Hebert P. 2009. DNA barcoding Central Asian butterflies: increasing geographical dimension does not significantly reduce the success of species identification. Mol Ecol Resour. 9(Suppl 5):1302–1310.
  • Marshall DC, Slon K, Cooley JR, Hill KBR, Simon C. 2008. Steady Plio-Pleistocene diversification and a 2-million-year sympatry threshold in a New Zealand cicada radiation. Mol Phylogenet Evol. 48(3):1054–1066.
  • Menon AGK. 1974. A check-list of fishes of the Himalayan and Indo-Gangetic Plains. Barrackpore, India: Central Inland Fisheries Research Institute; p. 23.
  • Mirza MR, Sandhu IA. 2007. Fishes of the Punjab, Pakistan. Pakistan: Polymer Publications.
  • Muchlisin ZA, Fadli N, Siti-Azizah MN. 2012. Genetic variation and taxonomy of Rasbora group (Cyprinidae) from Lake Laut Tawar. J Ichthyol. 52 (4):284–290.
  • Naeem M, Hassan S. 2019. Molecular approach for identification of Labeo bata based on CO1 gene. Mitochondrial DNA B Resour. 4(1):244–246.
  • Rahman A. 1974. Freshwater Fisheries Research Station Bulletin No. 1. p. 201.
  • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406–425.
  • Seifert KA, Samson RA, deWaard JR, Houbraken J, Levesque CA, Moncalvo J-M, Louis-Seize G, Hebert PDN. 2007. Prospects for fungus identification using COI DNA barcodes, with Penicillium as a test case study. PNAS. 104(10):3901–3906.
  • Shaw GE, Shebbeare EO. 1937. The fishes of Northern Bengal. J Royal Asiat Soc Bengal Sci. 8:1–137.
  • Singh AK, Pathak A, Lakra WS. 2010. Invasion of an exotic fish common carp (Actinopterygii: Cypriniformes: Cyprinidae) in the Ganga River, India and its impacts. Acta Icth et Piscat. 40(1):11–19.
  • Stoeckle M, Waggoner PE, Ausubel JS. 2004. Barcoding life: ten reasons. Consortium for the Barcode of Life, v3.0. Retrieved from: http://www.barcodeoflife.org/content/barcoding-life-ten-reasons-pamphlet
  • Takahara T, Minamoto T, Doi H. 2013. Using environmental DNA to estimate the distribution of an invasive fish species in ponds. PLoS One. 8(2):e56584.
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol E. 28:2731–2739.
  • Ward RD, Zemlak TS, Innes BH, Last PR, Hebert P. 2005. DNA barcoding Australia’s fish species. Philos Trans R Soc Lond, B, Biol Sci. 360(1462):1847–1857. 383: 81–89.
  • Ward RD. 2009. DNA barcode divergence among species and genera of birds and fishes. Mol Eco Res. 9(4):1077–1085.