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Mitogenome Announcement

Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae)

, , & ORCID Icon
Pages 2273-2275 | Received 30 Apr 2020, Accepted 09 May 2020, Published online: 02 Jun 2020

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19(5):455–477.
  • Chen XQ, Cribb PJ, Gale SW. 2009. Calanthe. In: Wu ZY, Raven PH, Hong DY, editors. Flora of China, Vol. 25. Beijing, St. Louis: Science Press, Missouri Botanic Garden Press. p. 292–301.
  • China Plant Specialist Group. 2004. Calanthe henryi. The IUCN Red List of Threatened Species 2004: e.T46641A11073138; [accessed 2020 May 18]. https://dx.doi.org/10.2305/IUCN.UK.2004.RLTS.T46641A11073138.en.
  • Dong WL, Wang RN, Zhang NY, Fan WB, Fang MF, Li ZH. 2018. Molecular evolution of chloroplast genomes of orchid species: insights into phylogenetic relationship and adaptive evolution. Int J Mol Sci. 19(3):716.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30(4):772–780.
  • Miao LY, Hu C, Huang WC, Jiang K. 2019. Chloroplast genome structure and phylogenetic position of Calanthe sylvatica (Thou.) Lindl. (Orchidaceae). Mitochondrial DNA B. 4(2):2625–2626.
  • Qu XJ, Moore MJ, Li DZ, Yi TS. 2019. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods. 15(1):50.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61(3):539–542.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Xiao JW, Xiang XM, Xie D, Wang BQ, Zhang DG, Chen G. 2017. Newly records of medicinal species in Jiangxi. China J Chin Mater Med. 42(22):4431–4435.
  • Yu X, Liu K, Huang K, Cao T. 2006. New recorded plants from Hunan province of China. J Cent South Forest Univ. 26(2):143–144.
  • Zhang Y. 2007. A list of the orchid plants in Fanjing Mountain National Nature Reserve. Guizhou, China Guizhou Sci. 25(1):43–53.
  • Zhong H, Shen L-M, Liu H-P, Liu Z-J, Wu S-S, Zhai J-W. 2019. The complete chloroplast genome of Calanthe arcuata, an endemic terrestrial orchid in China. Mitochondrial DNA B. 4(2):2629–2630.