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Mitogenome Announcement

The complete mitochondrial genomes of three imperiled cyprinid fishes Bonytail (Gila elegans), Rio Grande Silvery Minnow (Hybognathus amarus) and Loach Minnow (Tiaroga cobitis)

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Pages 2368-2370 | Received 22 Apr 2020, Accepted 26 Apr 2020, Published online: 08 Jun 2020

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Bronnenhuber, J.E. and Wilson, C.C., 2013. Combining species-specific COI primers with environmental DNA analysis for targeted detection of rare freshwater species. Conservation Genetics Res. 5(4):971–975.
  • Brown JR, Beckenbach AT, Smith MJ. 1993. Intraspecific DNA sequence variation of the mitochondrial control region of white sturgeon (Acipenser transmontanus). Molecular Biology and Evolution. 10(2):326–41. https://doi.org/10.1093/oxfordjournals.molbev.a040007
  • Dysthe JC, Carim KJ, Paroz YM, McKelvey KS, Young MK, Schwartz MK. 2016. Quantitative PCR assays for detecting loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) in the southwestern United States. PLOS One. 11(9):e0162200.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach. Nucleic Acids Res. 41(13):e129–e129.
  • Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, et al. 2013. MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol. 30(11):2531–2540.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874.
  • Minckley WL, Marsh PC. 2009. Inland Fishes of the Greater Southwest: Chronicle of a Vanishing Biota. University of Arizona Press. Tucson, Arizona.
  • Osborne MJ, Cordova SJ, Cameron AC, Turner TF. 2019. Isolation by elevation: mitochondrial divergence among sky island populations of Sacramento Mountain salamander (Aneides hardii). Conserv Genet. 20(3):545–556.
  • Ratnasingham S, Hebert PD. 2007. BOLD: the barcode of life data system (http://www.barcodinglife.org). Mol Ecol Notes. 7(3):355–364.
  • Schönhuth S, Vukić J, Šanda R, Yang L, Mayden RL. 2018. Phylogenetic relationships and classification of the Holarctic family Leuciscidae (Cypriniformes: Cyprinoidei). Mol Phylogenet Evol. 127:781–799.
  • Sublette EJ, Hatch DM, Sublette M. 1990. The Fishes of New Mexico. University of New Mexico Press. Albuquerque, New Mexico.
  • Taguchi M, King JR, Wetklo M, Withler RE, Yokawa K. 2015. Population genetic structure and demographic history of Pacific blue sharks (Prionace glauca) inferred from mitochondrial DNA analysis. Mar Freshwater Res. 66(3):267–275.