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Mitogenome Announcement

Characterization of the complete plastome sequence of perennial sowthistle, Sonchus arvensis (Asteraceae)

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Pages 2652-2654 | Received 26 May 2020, Accepted 30 May 2020, Published online: 06 Jul 2020

References

  • Boulos L. 1973. Révision systématique du genre Sonchus L. s.l. IV. Sous-genre 1. Sonchus Bot Notiser. 126:155–196.
  • Cho M-S, Kim JH, Kim C-S, Mejías JA, Kim S-C. 2019b. Sow thistle chloroplast genomes: insights into the plastome evolution and relationship of two weedy species, Sonchus asper and Sonchus oleraceus (Asteraceae). Genes. 10:881.
  • Cho M-S, Yang JY, Yang T-J, Kim S-C. 2019a. Evolutionary comparison of the chloroplast genome in the woody Sonchus alliance (Asteraceae) on the Canary Islands. Genes. 10(3):217.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kim S-C, Lee C, Mejías JA. 2007. Phylogenetic analysis of chloroplast DNA matK gene and ITS of nrDNA sequences reveals polyphyly of the genus Sonchus and new relationships among the subtribe Sonchinae (Asteraceae: Cichorieae). Mol Phylogenet Evol. 44(2):578–597.
  • Kim S-C, Lu CT, Lepschi BJ. 2004. Phylogenetic positions of Actites megalocarpa and Sonchus hydrophilus (Sonchinae: Asteraceae) based on ITS and chloroplast non-coding DNA sequences. Aust Systematic Bot. 17(1):73–81.
  • Kim S-H, Mejías JA, Kim S-C. 2019. Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco. Mitochondrial DNA B Resour. 4(1):164–165.
  • Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNammer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35(9):3100–3108.
  • Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32(1):11–16.
  • Lemna WK, Messersmith CG. 1990. The biology of Canadian weeds. 94. Sonchus arvensis L. Can J Plant Sci. 70(2):509–532.
  • Mejías JA, Chambouleyron M, Kim S-H, Infante MD, Kim S-C, Léger J-F. 2018. Phylogenetic and morphological analysis of a new cliff-dwelling species reveals a remnant ancestral diversity and evolutionary parallelism in Sonchus (Asteraceae). Plant Syst Evol. 304(8):1023–1040.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Wahyuni DK, Purnobasuki H, Kuncoro EP, Ekasari W. 2020. Callus induction of Sonchus arvensis L. and its antiplasmodial activity. Afr J Infect Dis. 14(1):1–7.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20(17):3252–3255.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821–829.