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Mitochondrial DNA Part B
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Volume 5, 2020 - Issue 3
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Mitogenome Announcement

Extensive gene loss in the plastome of holoparasitic plant Cistanche tubulosa (Orobanchaceae)

Wanqi Xua Key Research Laboratory of Traditional Chinese Medicine Resources Protection from Ministry of Education, Engineering Research Center of Chinese Medicine Resource, National Administration of Traditional Chinese Medicine, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, ChinaView further author information
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Haimei Chena Key Research Laboratory of Traditional Chinese Medicine Resources Protection from Ministry of Education, Engineering Research Center of Chinese Medicine Resource, National Administration of Traditional Chinese Medicine, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, ChinaView further author information
,
Lixia Tiana Key Research Laboratory of Traditional Chinese Medicine Resources Protection from Ministry of Education, Engineering Research Center of Chinese Medicine Resource, National Administration of Traditional Chinese Medicine, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, ChinaView further author information
,
Mei Jianga Key Research Laboratory of Traditional Chinese Medicine Resources Protection from Ministry of Education, Engineering Research Center of Chinese Medicine Resource, National Administration of Traditional Chinese Medicine, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, ChinaView further author information
,
Qiaoqiao Yanga Key Research Laboratory of Traditional Chinese Medicine Resources Protection from Ministry of Education, Engineering Research Center of Chinese Medicine Resource, National Administration of Traditional Chinese Medicine, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, ChinaView further author information
,
Liqiang Wanga Key Research Laboratory of Traditional Chinese Medicine Resources Protection from Ministry of Education, Engineering Research Center of Chinese Medicine Resource, National Administration of Traditional Chinese Medicine, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, ChinaView further author information
,
Bashir Ahmadb Center for Biotechnology and Microbiology, University of Peshawar, Peshawar, PakistanView further author information
&
LinFang Huanga Key Research Laboratory of Traditional Chinese Medicine Resources Protection from Ministry of Education, Engineering Research Center of Chinese Medicine Resource, National Administration of Traditional Chinese Medicine, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, ChinaCorrespondence[email protected]
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Pages 2679-2681 | Received 07 Jun 2020, Accepted 20 Jun 2020, Published online: 08 Jul 2020

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Cusimano N, Wicke S. 2016. Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae. New Phytol. 210(2):680–693.
  • Fu Z, Fan X, Wang X, Gao X. 2018. Cistanches Herba: an overview of its chemistry, pharmacology, and pharmacokinetics property. J Ethnopharmacol. 219:233–247.
  • Gao Y, Guo LN, Ma SC, Liu J, Zheng J, Zan K. 2019. Comparative studies of three Cistanche species based on UPLC specific chromatogram and determination of main components. Zhongguo Zhong Yao Za Zhi. 44(17):3749–3757.
  • Grant JR, Stothard P. 2008. The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 36(Web Server):W181–W184.
  • Lewis SE, Searle SMJ, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA, et al. 2002. Apollo: a sequence annotation editor. Genome Biol. 3(12):RESEARCH0082.
  • Lohse M, Drechsel O, Kahlau S, Bock R. 2013. OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucleic Acids Res. 41(Web Server issue):W575–W581.
  • Morikawa T, Xie H, Pan Y, Ninomiya K, Yuan D, Jia X, Yoshikawa M, Nakamura S, Matsuda H, Muraoka O. 2019. A review of biologically active natural products from a desert plant Cistanche tubulosa. Chem Pharm Bull. 67(7):675–689.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Thompson JD, Gibson TJ, Higgins DG. 2002. Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics. Chapter 2:2.3.1–2.3.22.
  • Xi L, Ti-Cao Z, Qin Q, Zhumei R, Jiayuan Z, Takahiro Y, Masami H, Crabbe MJC, Jianqiang L, Yang Z. 2013. Complete chloroplast genome sequence of holoparasite Cistanche deserticola (Orobanchaceae) reveals gene loss and horizontal gene transfer from its host Haloxylon ammodendron (Chenopodiaceae). PLoS One. 8(3):e58747
  • Yong J, Peng-Fei T. 2009. Analysis of chemical constituents in Cistanche species. J Chromatogr A. 1216(11):1970–1979.

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