Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 5, 2020 - Issue 3
Submit an article Journal homepage
879
Views
6
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete mitogenome and plastome of the haptophyte Pavlova lutheri NIVA-4/92

Chris J. Hulatta Faculty of Biosciences and Aquaculture, Nord University, Mørkvedbukta Research Station, Bodø, Norway;b Department of Chemistry, Colorado School of Mines, Golden, CO, USACorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-2741-8402View further author information
ORCID Icon,
René H. Wijffelsa Faculty of Biosciences and Aquaculture, Nord University, Mørkvedbukta Research Station, Bodø, Norway;c Bioprocess Engineering, AlgaePARC, Wageningen University and Research, Wageningen, The NetherlandsView further author information
,
Kiron Viswanatha Faculty of Biosciences and Aquaculture, Nord University, Mørkvedbukta Research Station, Bodø, NorwayView further author information
&
Matthew C. Posewitzb Department of Chemistry, Colorado School of Mines, Golden, CO, USAView further author information
Pages 2748-2749 | Received 04 Jun 2020, Accepted 20 Jun 2020, Published online: 13 Jul 2020

References

  • Baurain D, Brinkmann H, Petersen J, Rodríguez-Ezpeleta N, Stechmann A, Demoulin V, Roger AJ, Burger G, Lang BF, Philippe H. 2010. Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles. Mol Biol Evol. 27(7):1698–1709.
  • Bendif EM, Probert I, Hervé A, Billard C, Goux D, Lelong C, Cadoret J-P, Véron B. 2011. Integrative taxonomy of the Pavlovophyceae (Haptophyta): a reassessment. Protist. 162(5):738–761.
  • Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27(2):573–580.
  • Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol. 56(4):564–577.
  • Chan PP, Lowe TM. 2019. tRNAscan-SE: searching for tRNA genes in genomic sequences. Gene prediction. New York: Humana; p. 1–14.
  • Garrison E, Marth G. 2012. Haplotype-based variant detection from short-read sequencing. arXiv preprint arXiv:1207.3907 [q-bio.GN]
  • Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM. 2017. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res. 27(5):722–736.
  • Liu H, Probert I, Uitz J, Claustre H, Aris-Brosou S, Frada M, Not F, de Vargas C. 2009. Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans. Proc Natl Acad Sci USA. 106(31):12803–12808.
  • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16:276–277.
  • Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, et al. 2011. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol. 7(1):539.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq- versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, et al. 2014. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One. 9(11):e112963.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.