References
- Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
- Buchfink B, Xie C, Huson DH. 2015. Fast and sensitive protein alignment using DIAMOND. Nat Methods. 12(1):59–60.
- Castillo G, Calahorra‐Oliart A, Núñez‐Farfán J, Valverde PL, Arroyo J, Cruz LL, Tapia‐López R. 2019. Selection on tropane alkaloids in native and non-native populations of Datura stramonium. Ecol Evol. 9(18):10176–10184.
- Castillo G, Cruz LL, Hernández-Cumplido J, Oyama K, Flores-Ortiz CM, Fornoni J, Valverde PL, Núñez-Farfán J. 2013. Geographic association and temporal variation of chemical and physical defense and leaf damage in Datura stramonium. Ecol Res. 28(4):663–672.
- De-la-Cruz IM, Cruz LL, Martínez-García L, Valverde PL, Flores-Ortiz CM, Hernández-Portilla LB, Núñez-Farfán J. 2020. Evolutionary response to herbivory: population differentiation in microsatellite loci, tropane alkaloids and leaf trichome density in Datura stramonium. Arthropod Plant Interact. 14(1):21–30.
- Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
- Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
- Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066.
- Kohnen-Johannsen KL, Kayser O. 2019. Tropane alkaloids: chemistry, pharmacology, biosynthesis and production. Molecules. 24(4):796.
- Kozlov AM, Darriba D, Flouri T, Morel B, Stamatakis A. 2019. RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics. 35(21):4453–4455.
- Núñez-Farfán, J., and Dirzo, R. (1994). Evolutionary ecology of Datura Stramonium L. in central mexico: natural selection for resistance to herbivorous insects. Evolution, 48(2):423–436.
- Olmstead R, Bohs L, Migid H, Santiago-Valentin E, Garcia V, Collier S. 2008. Molecular phylogeny of the Solanaceae. Taxon. 57(4):1159–1181.
- Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R and Greiner S (2017) GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Research 45:W6–W11.
- Weaver, S. E., and S. I. Warwick, 1984 The biology of Canadian weeds: 64. Datura stramonium L. Canadian Journal of Plant Science: 64: 979–991.
- Yang Y, Dang Y, Yuanye D, Li Q, Qing L, Lu J, Jinjian L, Li X, Xiwen L, Wang Y, et al. 2014. Complete chloroplast genome sequence of poisonous and medicinal plant Datura stramonium: organizations and implications for genetic engineering. PLOS One. 9(11):e110656.