Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 5, 2020 - Issue 3
Submit an article Journal homepage
712
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genomes of the freshwater mussels Amblema plicata (Say, 1817), Pleurobema oviforme (Conrad, 1834), and Popenaias popeii (Lea, 1857) (Bivalvia: Unionidae: Ambleminae)

João Teiga-Teixeiraa CIIMAR/CIMAR – Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, PortugalCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-9667-0265View further author information
ORCID Icon,
Elsa Froufea CIIMAR/CIMAR – Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, PortugalORCID Iconhttps://orcid.org/0000-0003-0262-0791View further author information
ORCID Icon,
André Gomes-dos-Santosa CIIMAR/CIMAR – Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal;b Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre, Porto, PortugalORCID Iconhttps://orcid.org/0000-0001-9973-4861View further author information
ORCID Icon,
Arthur E. Boganc North Carolina Museum of Natural Sciences, Raleigh, NC, USAORCID Iconhttps://orcid.org/0000-0003-4042-7706View further author information
ORCID Icon,
Alexander Y. Karatayevd Great Lakes Center, Buffalo State College, Buffalo, NY, USAORCID Iconhttps://orcid.org/0000-0002-4432-5232View further author information
ORCID Icon,
Lyubov E. Burlakovad Great Lakes Center, Buffalo State College, Buffalo, NY, USAORCID Iconhttps://orcid.org/0000-0002-2995-919XView further author information
ORCID Icon,
David C. Aldridgee Department of Zoology, University of Cambridge, Cambridge, UKORCID Iconhttps://orcid.org/0000-0001-9067-8592View further author information
ORCID Icon,
Ivan N. Bolotovf Federal Center for Integrated Arctic Research of the Russian Academy of Sciences, Arkhangelsk, RussiaORCID Iconhttps://orcid.org/0000-0002-3878-4192View further author information
ORCID Icon,
Ilya V. Vikhrevf Federal Center for Integrated Arctic Research of the Russian Academy of Sciences, Arkhangelsk, RussiaORCID Iconhttps://orcid.org/0000-0002-8612-7736View further author information
ORCID Icon,
Amílcar Teixeirag Centro de Investigação de Montanha (CIMO), Instituto Politécnico de Bragança, Bragança, PortugalORCID Iconhttps://orcid.org/0000-0001-5336-1174View further author information
ORCID Icon,
Simone Varandash CITAB-UTAD – Centre for Research and Technology of Agro-Environment and Biological Sciences, University of Trás-os-Montes and Alto Douro, Vila Real, PortugalORCID Iconhttps://orcid.org/0000-0001-5038-6085View further author information
ORCID Icon,
David T. Zanattai Biology Department, Institute for Great Lakes Research, Central Michigan University, Mount Pleasant, MI, USAORCID Iconhttps://orcid.org/0000-0002-3174-071XView further author information
ORCID Icon &
Manuel Lopes-Limaa CIIMAR/CIMAR – Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal;j CIBIO – Centro de Investigação em Biodiversidade e Recursos Genéticos, InBio Laboratório Associado, Universidade do Porto, Porto, PortugalORCID Iconhttps://orcid.org/0000-0002-2761-7962View further author information
ORCID Icon show all
Pages 2959-2961 | Received 23 Jun 2020, Accepted 29 Jun 2020, Published online: 24 Jul 2020

References

  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Haag WR, Williams JD. 2014. Biodiversity on the brink: an assessment of conservation strategies for North American freshwater mussels. Hydrobiologia. 735(1):45–60.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach. Nucleic Acid Res. 41(13):e129–e129.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2016. Partition finder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Mol Biol Evol. 34:772–773.
  • Levine TD, Lang BK, Berg DJ. 2012. Physiological and exological hosts of Popenaias popeii (Bivalvia: Unionidae): laboratory studies identify more hosts than field studies. Freshwater Biol. 57(9):1854–1864.
  • Lopes-Lima M, Burlakova LE, Karatayev AY, Mehler K, Seddon M, Sousa R. 2018. Conservation of freshwater bivalves at the global scale: diversity, threats and research needs. Hydrobiologia. 810(1):1–14.
  • Lopes-Lima M, Fonseca MM, Aldridge DC, Bogan AE, Gan HM, Ghamizi M, Sousa R, Teixeira A, Varandas S, Zanatta D, et al. 2017. The first Margaritiferidae male (M-type) mitogenome: mitochondrial gene order as a potential character for determining higher-order phylogeny within Unionida (Bivalvia). J Molluscan Stud. 83(2):249–252.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES science gateway for interference for large phylogenetic trees. Proceedings of the gateway computing  environments workshop (GCE), IEEE, 14 Nov. 2010, New Orleans (LA); p. 1–8.
  • Nguyen LT, Schmidt HA, Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Pfeiffer JM, Atkinson CL, Sharpe AE, Capps KA, Emery KF, Page LM. 2019. Phylogeny of Mesoamerican freshwater mussels and a revised tribe-level classification of the Ambleminae. Zool Scr. 48(1):106–112.
  • Ronquist F, Teslenko M, Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
  • Sela I, Ashkenazy H, Katoh K, Pupko T. 2015. GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. Nucleic Acids Res. 43(W1):W7–W14.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.