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Mitogenome Announcement

The complete mitochondrial genome of Pyropia pulchra (Bangiophyceae, Rhodophyta)

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Pages 3157-3158 | Received 09 Jul 2020, Accepted 11 Jul 2020, Published online: 12 Aug 2020

References

  • Augytė S, Shaughnessy FJ. 2014. A floristic analysis of the marine algae and seagrasses between Cape Mendocino, California and Cape Blanco, Oregon, USA. Bot Mar. 57(4):251–263.
  • Blouin NA, Brodie JA, Grossman AC, Xu P, Brawley SH. 2011. Porphyra: a marine crop shaped by stress. Trends Plant Sci. 16(1):1360–1385.
  • Cao M, Bi G, Mao Y, Li G, Kong F. 2018. The first plastid genome of a filamentous taxon 'Bangia' sp. OUCPT-01 in the Bangiales. Sci Rep. 8(1):10688.
  • Harden LK, Morales KM, Hughey JR. 2016. Identification of a new marine algal species Pyropia nitida sp. nov. (Bangiales: Rhodophyta) from Monterey, California. Mitochondrial DNA A. 27(4):3058–3062.
  • Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinformatics. 9(4):286–298.
  • Kim GH, Moon KH, Kim JY, Shim J, Klochkova TA. 2014. A revaluation of algal diseases in Korean Pyropia (Porphyra) sea farms and their economic impact. Algae. 29(4):249–265.
  • Koh YH, Kim MS. 2018. DNA barcoding reveals cryptic diversity of economic red algae, Pyropia (Bangiales, Rhodophyta): description of novel species from Korea. J Appl Phycol. 30(6):3425–3434.
  • Kucera H, Saunders GW. 2012. A survey of Bangiales (Rhodophyta) based on multiple molecular markers reveals cryptic diversity. J Phycol. 48(4):8:869–882.
  • Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35(9):3100–3108.
  • Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32(1):11–16.
  • Lee JM, Kim KM, Yang EC, Miller KA, Boo SM, Bhattacharya D, Yoon HS. 2016. Reconstructing the complex evolutionary history of mobile plasmids in red algal genomes. Sci Rep. 6:23744.
  • Lindstrom SC, Hughey JR. 2016. Pyropia smithii is Pyropia pulchra comb. nov. Madroño. 63(3):281–282.
  • Milstein D, de Oliveira MC. 2005. Molecular phylogeny of Bangiales (Rhodophyta) based on small subunit rDNA sequencing: emphasis on Brazilian Porphyra species. Phycologia. 44(2):212–221.
  • Nelson WA, Farr TJ, Broom JES. 2006. Phylogenetic relationships and generic concepts in the red order Bangiales: challenges ahead. Phycologia. 45(3):249–259.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Sutherland JE, Lindstrom SC, Nelson WA, Brodie J, Lynch MDJ, Hwang MS, Choi HG, Miyata M, Kikuchi N, Oliveira MC, et al. 2011. A new look at an ancient order: generic revision of the Bangiales (Rhodophyta)(1)). J Phycol. 47(5):1131–1151.