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Mitogenome Announcement

Plastome structure and phylogeny of Gnetum luofuense C.Y. Cheng (Gnetaceae, Gnetales)

, ORCID Icon, , & ORCID Icon
Pages 3369-3370 | Received 29 Jul 2020, Accepted 05 Sep 2020, Published online: 18 Sep 2020

References

  • Baloch E. 2011. Gnetum luofuense. The IUCN red list of threatened species. 2011:e.T194922A8919354. https://www.iucnredlist.org/species/194922/8919354. Downloaded on 22 June 2020.
  • Chan PP, Lowe TM. 2019. tRNAscan-SE: searching for tRNA genes in genomic sequences. Meth Mol Biol. 1962:1–14.
  • Chang ACG, Lai Q, Chen T, Tu T, Wang Y, Agoo EMG, Duan J, Li N. 2020. The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales. PeerJ. 8:e8305.
  • Fu LG, Yu YF, Gilbert MG. 1999. Gnetaceae. Flora of China. Vol. 4. p. 102–105. Published on the Internet http://www.efloras.org [accessed 22 June 2020] Missouri Botanical Garden, St. Louis, MO & Harvard University Herbaria, Cambridge, MA.
  • IUCN. 2020. The IUCN red list of threatened species. Version 2020-2. https://www.iucnredlist.org. Downloaded on 22 June 2020.
  • Lagesen K, Hallin PF, Rodland E, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35 (9):3100–3108.
  • Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13:715.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES science gateway for inference of large phylogenetic trees. Piscataway (NJ): IEEE.
  • Ran JH, Shen TT, Wang MM, Wang XQ. 2018. Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms. Proc Royal Soc B. 285:20181012.
  • Shi C, Hu N, Huang H, Gao J, Zhao YJ, Gao LZ. 2012. An improved chloroplast DNA extraction procedure for whole plastid genome sequencing. PLoS One. 7(2):e31468.
  • Vasilinetc I, Prjibelski AD, Gurevich A, Korobeynikov A, Pevzner PA. 2015. Assembling short reads from jumping libraries with large insert sizes. Bioinformatics. 31 (20):3262–3268.
  • Wan T, Liu ZM, Li LF, Leitch AR, Leitch IJ, Lohaus R, Liu ZJ, Xin HP, Gong YB, Liu Y, et al. 2018. A genome for gnetophytes and early evolution of seed plants. Nat Plants. 4(2):82–89.
  • Zhong B, Yonezawa T, Zhong Y, Hasegawa M. 2010. The position of Gnetales among seed plants: overcoming pitfalls of chloroplast phylogenomics. Mol Biol Evol. 27(12):2855–2863.