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Mitogenome Announcement

Next-generation sequencing yields the complete chloroplast genome of Abies yuanbaoshanensis, an endangered species from South China

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Pages 3821-3822 | Received 19 Sep 2020, Accepted 20 Oct 2020, Published online: 24 Dec 2020

References

  • Farjon A. 1990. Pinaceae: drawings and descriptions of the genera Abies, Cedrus, Pseudolarix, Keteleeria, Nothotsuga, Tsuga, Cathaya, Pseudotsuga, Larix and Picea (Regnum Vegetabile 121). Königstei (Germany): Koeltz Scientific Books.
  • Farjon A. 2001. World checklist and bibliography of conifers. 2nd ed. London: The Royal Botanic Gardens, Kew.
  • IUCN. 2018. The IUCN red list of threatened species. Version 2018-1; [accessed 2018 Aug 20]. www.iucnredlist.org.
  • Liu TS. 1971. A monograph of the genus Abies. Taipei (Taiwan): Department of Forestry, College of Agriculture, National Taiwan University.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES science gateway for inference of large phylogenetic trees. 2010 gateway computing environments workshop (GCE 2010). Washington (DC): IEEE Computer Society.
  • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19(12):1572–1574.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP, et al. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
  • Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686–W689.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Xiang QP, Wei R, Shao YZ, Yang ZY, Wang XQ, Zhang XC. 2015. Phylogenetic relationships, possible ancient hybridization, and biogeographic history of Abies (Pinaceae) based on data from nuclear, plastid, and mitochondrial genomes. Mol Phylo Evol. 82:1–14.
  • Yi DK, Yang JC, So S, Joo MJ, Kim DK, Shin CH, Lee YM, Choi K. 2015. The complete plastid genome sequence of Abies koreana (Pinaceae: Abietoideae). Mitochondrial DNA. 27(4):1.