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Mitogenome Announcement

Complete chloroplast genome sequence and phylogenetic analysis of Camellia fraterna

, ORCID Icon, ORCID Icon, , &
Pages 3840-3842 | Received 13 Aug 2020, Accepted 14 Oct 2020, Published online: 24 Dec 2020

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973.
  • Fredrik R, Maxim T, Paul VDM, Daniel LA, Aaron D, Sebastian H, Bret L, Liang L, Marc AS, John PH. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539–542.
  • Kazutaka K, Kei-Ichi K, Hiroyuki T, Takashi M. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33:511–518.
  • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9(4):357–359.
  • Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and Genbank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13:715.
  • Liu XF, Ye YJ, Liu JM, Yu B, Xu YC. 2020. Complete chloroplast genome sequence and phylogenetic analysis of Celosia cristata ‘Xiaguang’. Mitochondrial DNA B. 5(2):1338–1339.
  • Liu XF, Zhu GF, Li DM, Wang XJ. 2019. Complete chloroplast genome sequence and phylogenetic analysis of Spathiphyllum 'Parrish'. PLoS One. 14(10):e0224038.
  • Liu XF, Zhu GF, Li DM, Wang XJ. 2019. The complete chloroplast genome sequence of Spathiphyllum cannifolium. Mitochondrial DNA B. 4(1):1822–1823.
  • Lohse M, Drechsel O, Bock R. 2007. OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr Genet. 52(5–6):267–274.
  • Marcais G, Kingsford C. 2011. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics. 27(6):764–770.
  • Souza UJBd, Nunes R, Targueta CP, Diniz-Filho JAF, Telles MPC. 2019. The complete chloroplast genome of Stryphnodendron adstringens (Leguminosae – Caesalpinioideae): comparative analysis with related Mimosoid species. Sci Rep. 9(1):14206.