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Mitochondrial DNA Part B
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Volume 5, 2020 - Issue 4
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Mitogenome Announcement

Next-generation sequencing yields complete mitochondrial genome assembly of peaceful betta fish, Betta imbellis (Teleostei: Osphronemidae)

Syed Farhan Ahmada Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Nararat Laopichienponga Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Worapong Singchata Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Aorarat Suntronponga Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Tavun Pongsanarma Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Thitipong Panthuma Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Nattakan Ariyaraphonga Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Jakaphan Bulana Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Tanawat Pansrikaewa Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Kornsuang Jangtarwana Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Navapong Subpayakoma Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
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Sahabhop Dokkaewc Department of Aquaculture, Faculty of Fisheries, Kasetsart University, Bangkok, ThailandView further author information
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Narongrit Muangmaib Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, Thailand;d Department of Fishery Biology, Faculty of Fisheries, Kasetsart University, Bangkok, ThailandORCID Iconhttps://orcid.org/0000-0001-7954-7348View further author information
ORCID Icon,
Prateep Duengkaeb Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, ThailandView further author information
&
Kornsorn Srikulnatha Department of Genetics, Faculty of Science, Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Kasetsart University, Bangkok, Thailand;b Department of Forest Biology, Faculty of Forestry, Special Research Unit for Wildlife Genomics (SRUWG), Kasetsart University, Bangkok, Thailand;e Center for Advanced Studies in Tropical Natural Resources, National Research University-Kasetsart University (CASTNAR, NRU-KU), Kasetsart University, Bangkok, Thailand;f Center of Excellence on Agricultural Biotechnology (AG-BIO/PERDO-CHE), Bangkok, Thailand;g Amphibian Research Center, Hiroshima University, Higashihiroshima, JapanCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-5985-7258View further author information
ORCID Icon show all
Pages 3856-3858 | Received 16 Sep 2020, Accepted 18 Oct 2020, Published online: 24 Dec 2020

References

  • Beer SD, Cornett S, Austerman P, Trometer B, Hoffman T, Bartron ML. 2019. Genetic diversity, admixture, and hatchery influence in Brook Trout (Salvelinus fontinalis) throughout western New York State. Ecol Evol. 9(13):7455–7479.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina Sequence Data. Bioinformatics. 30(15):2114–2120.
  • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17(8):754–755.
  • Kusrini E, Rahmawati R, Murniasih S, Kusumah RV, Prasetio AB. 2015. Growth and colour performance of the crossbreed marble strain Betta splendens and Betta imbellis. Indonesian Aquacult J. 10(2):101–112.
  • Lee WJ, Kocher TD. 1995. Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization. Genetics. 139(2):873–887.
  • Li H, Durbin H. 2009. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics. 25(14):1754–1760.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. 2009. The sequence alignment/Map format and SAMtools. Bioinformatics. 25(16):2078–2079.
  • Miya M, Friedman M, Satoh TP, Takeshima H, Sado T, Iwasaki W, Yamanoue Y, Nakatani M, Nakatani K, Inoue JG, et al. 2013. Evolutionary origin of the Scombridae (Tunas and Mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families. PLoS One. 8(9):e73535.
  • Panijpan B, Kowasupat C, Laosinchai P, Ruenwongsa P, Phongdara A, Senapin S, Wanna W, Phiwsaiya K, Kühne J, Fasquel F. 2014. Southeast Asian mouth-brooding Betta fighting fish (Teleostei: Perciformes) species and their phylogenetic relationships based on mitochondrial COI and nuclear ITS1 DNA sequences and analyses. Meta Gene. 2:862–879.
  • Ponjarat J, Areesirisuk P, Prakhongcheep O, Dokkaew S, Sillapaprayoon S, Muangmai N, Peyachoknagul S, Srikulnath K. 2019. Complete mitochondrial genome of two mouthbrooding fighting fishes, Betta apollon and B. simplex (Teleostei: Osphronemidae). Mitochondrial DNA B Resour. 4(1):672–674.
  • Prakhongcheep O, Muangmai N, Peyachoknagul S, Srikulnath K. 2018. Complete mitochondrial genome of mouthbrooding fighting fish (Betta pi) compared with bubble nesting fighting fish (B. splendens). Mitochondrial DNA B Resour. 3(1):6–8.
  • Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 26(6):841–842.
  • Ruber L, Britz R, Tan HH, Ng PKL, Zardoya R. 2004. Evolution of mouthbrooding and life-history correlates in the fighting fish genus Betta. Evolution. 58(4):799–813.
  • Singchat W, Ahmad SF, Laopichienpong N, Suntronpong A, Pongsanarm T, Panthum T, Ariyaraphong N, Subpayakom N, Dokkaew S, Muangmai N, et al. 2020. Complete mitochondrial genome of Mahachai betta, Betta mahachaiensis (Teleostei: Osphronemidae). Mitochondrial DNA B Resour. 5(3):3077–3079.
  • Song YN, Xiao GB, Li JT. 2016. Complete mitochondrial genome of the Siamese fighting fish (Betta splendens). Mitochondrial DNA A DNA Mapp Seq Anal. 27(6):4580–4581.
  • Sriwattanarothai N, Steinke D, Ruenwongsa P, Hanner R, Panijpan B. 2010. Molecular and morphological evidence supports the species status of the Mahachai fighter Betta sp. Mahachai and reveals new species of Betta from Thailand. J Fish Biol. 77(2):414–424.
  • Supikamolseni A, Ngaoburanawit N, Sumontha M, Chanhome L, Suntrarachun S, Peyachoknagul S, Srikulnath K. 2015. Molecular barcoding of venomous snakes and species-specific multiplex PCR assay to identify snake groups for which antivenom is available in Thailand. Genet Mol Res. 14(4):13981–13997.
  • Zerbino D, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821–829.

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