709
Views
3
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genome of the gate-keeper ant Colobopsis nipponica (Wheeler, W.M., 1928) (Formicidae: Hymenoptera)

& ORCID Icon
Pages 86-88 | Received 15 Oct 2020, Accepted 29 Oct 2020, Published online: 11 Jan 2021

References

  • Abascal F, Zardoya R, Telford MJ. 2010. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res. 38(Web Server issue):W7–W13.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Blaimer BB, Brady SG, Schultz TR, Lloyd MW, Fisher BL, Ward PS. 2015. Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants. BMC Evol Biol. 15(1):271.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Chen Z, Zhou SY, Ye D, Chen Y, Lu C. 2013. Molecular phylogeny of the ant subfamily Formicinae (Hymenoptera, Formicidae) from China based on mitochondrial genes. Sociobiology. 60(2):135–144.
  • Janicki J, Narula N, Ziegler M, Guénard B, Economo EP. 2016. Visualizing and interacting with large-volume biodiversity data using client–server web-mapping applications: the design and implementation of antmaps.org. Ecol Inf. 32:185–193.
  • Kim MJ, Hong EJ, Kim I. 2016. Complete mitochondrial genome of Camponotus atrox (Hymenoptera: Formicidae): a new tRNA arrangement in Hymenoptera. Genome. 59(1):59–74.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079.
  • Liu J-H, Jia P-F, Fu J-Q, Dan W-L, Yang L-Y, Wang Q-M, Li Z-N. 2017. Characterization of mitochondrial genome and phylogenetic implications for Chinese black ant, Polyrhachis dives (Hymenoptera: Formicidae). Mitochondrial DNA Part B. 2(2):679–680.
  • Park J, Kwon W, Park J. 2019. The complete mitochondrial genome of Camponotus concavus Kim & Kim, 1994 (Hymenoptera: Formicidae). Mitochondrial DNA Part B. 4(1):1243–1244.
  • Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
  • Song N, Liang A-P. 2013. A preliminary molecular phylogeny of planthoppers (Hemiptera: Fulgoroidea) based on nuclear and mitochondrial DNA sequences. PLoS One. 8(3):e58400.
  • Vieira GA, Prosdocimi F. 2019. Accessible molecular phylogenomics at no cost: obtaining 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data. PeerJ. 7:e6271
  • Ward PS, Blaimer BB, Fisher BL. 2016. A revised phylogenetic classification of the ant subfamily Formicinae (Hymenoptera: Formicidae), with resurrection of the genera Colobopsis and Dinomyrmex. Zootaxa. 4072(3):343–357.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821–829.
  • Zhao QY, Wang Y, Kong YM, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinf. 12(Suppl 14):S2.