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Mitogenome Announcement

The complete chloroplast genome of Isodon rubescens, a traditional Chinese herb

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Pages 337-338 | Received 22 Sep 2020, Accepted 27 Nov 2020, Published online: 08 Feb 2021

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973.
  • Coil D, Jospin G, Darling AE. 2015. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics. 31(4):587–589.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5(2):R12.
  • Leung C-H, Grill SP, Lam W, Han Q-B, Sun H-D, Cheng Y-C. 2005. Novel mechanism of inhibition of nuclear factor-kappa B DNA-binding activity by diterpenoids isolated from Isodon rubescens. Mol Pharmacol. 68(2):286–297.
  • Li B, Cantino PD, Olmstead RG, Bramley GLC, Xiang C-L, Ma Z-H, Tan Y-H, Zhang D-X. 2016. A large-scale chloroplast phylogeny of the Lamiaceae sheds new light on its subfamilial classification. Sci Rep. 6(1):34318–34343.
  • Neelamkavil SV, Thoppil JE. 2017. Chromosome complements of Isodon (Family: Lamiaceae-Subfamily: Nepetoideae): trends in karyotype evolution. Proc Natl Acad Sci, India, Sect B Biol Sci. 87(2):267–272.
  • Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Porebski S, Bailey LG, Baum BR. 1997. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep. 15(1):8–15.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Su X, Li Q, Chen S, Dong C, Hu Y, Yin L, Yang J. 2016. Analysis of the transcriptome of Isodon rubescens and key enzymes involved in terpenoid biosynthesis. Biotechnol Biotechnological Equipment. 30(3):592–601.
  • Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, et al. 2014. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLOS One. 9(11):e112963.
  • Zhang Y-Y, Jiang H-Y, Liu M, Hu K, Wang W-G, Du X, Li X-N, Pu J-X, Sun H-D. 2017. Bioactive ent-kaurane diterpenoids from Isodon rubescens. Phytochemistry. 143:199–207.