596
Views
2
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Chloroplast genome organization and phylogeny of Gynochthodes cochinchinensis (DC.) Razafim. & B. Bremer (Rubiaceae)

ORCID Icon, , , ORCID Icon, ORCID Icon &
Pages 261-262 | Received 06 Oct 2020, Accepted 12 Nov 2020, Published online: 27 Jan 2021

References

  • Blume CL. 1827. Gynochthodes. Bijdragen tot de flora van Nederlandsch Indie. 16:993.
  • Chan PP. Lowe TM. 2019. tRNAscan-SE: searching for tRNA genes in genomic sequences. Methods Mol Biol. 1962:1–14.
  • Lagesen K, Hallin P, Rødland EA, Stærfeldt H-H, Rognes T, Ussery DW. 2007. RNAmmer: Consistent annotation of rRNA genes in genomic sequences. Nucleic Acids Res. 35 (9):3100–3108.
  • Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13:715.
  • Patel RK, Jain M. 2012. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 7(2):e30619.
  • Pharmacognocy. 2020. Morinda cochinchinensis DC. [accessed 2020 Sept 8]. http://www.epharmacognosy.com/2020/06/morinda-cochinchinensis-dc.html.
  • Razafimandimbison SG, Bremer B. 2011. Nomenclatural changes and taxonomic notes in the tribe Morindeae (Rubiaceae). Adansonia (sér. 3). 33(2):283–309.
  • Razafimandimbison SG, McDowell TD, Halford DA, Bremer B. 2009. Molecular phylogenetics and generic assessment in the tribe Morindeae (Rubiaceae-Rubioideae): how to circumscribe Morinda L. to be monophyletic? Mol Phylogenet Evol. 52(3):879–886.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Vasilinetc I, Prjibelski AD, Gurevich A, Korobeynikov A, Pevzner PA. 2015. Assembling short reads from jumping libraries with large insert sizes. Bioinformatics. 31(20):3262–3326.