948
Views
2
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Shedding light on the Chimaeridae taxonomy: the complete mitochondrial genome of the cartilaginous fish Hydrolagus mirabilis (Collett, 1904) (Holocephali: Chimaeridae)

ORCID Icon, , , ORCID Icon, , , & ORCID Icon show all
Pages 420-422 | Received 29 Sep 2020, Accepted 15 Nov 2020, Published online: 09 Feb 2021

References

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215(3):403–410.
  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Boisvert CA, Johnston P, Trinajstic K, Johanson Z. 2019. Chondrichthyan evolution, diversity, and senses. Cham: Springer; p. 65–91.
  • Catarino D, Jakobsen K, Jakobsen J, Giacomello E, Menezes GM, Diogo H, Canha Â, Porteiro FM, Melo O, Stefanni S. 2020. First record of the opal chimaera, Chimaera opalescens (Holocephali: Chimaeridae) and revision of the occurrence of the rabbitfish Chimaera monstrosa in the Azores waters. J Fish Biol. 97:763–775.
  • Davidson LNK, Krawchuk MA, Dulvy NK. 2016. Why have global shark and ray landings declined: improved management or overfishing? Fish Fish. 17(2):438–458.
  • Dulvy NK, Fowler SL, Musick JA, Cavanagh RD, Kyne PM, Harrison LR, Carlson JK, Davidson LN, Fordham SV, Francis MP, et al. 2014. Extinction risk and conservation of the world’s sharks and rays. Elife. 3:e00590.
  • Finucci B. 2020. Hydrolagus mirabilis. IUCN red list of threatened species. 2020:e.T63104A124458962; [accessed 2020 Sep]. https://dx.doi.org/10.2305/IUCN.UK.2020-2.RLTS.T63104A124458962.en
  • Freitas M, Almeida AJ, Delgado J, González JA, Santana JI, Biscoito M. 2011. First record of Hydrolagus affinis (Holocephali: Chimaeriformes: Chimaeridae) from Madeira and the seine seamount (North Atlantic Ocean). Acta Icth Piscat. 41(3):255–257.
  • Gomes-dos-Santos A, Arrondo NV, Machado AM, Veríssimo A, Pérez M, Román E, Castro LFC, Froufe E. 2020. The complete mitochondrial genome of the deep-water cartilaginous fish Hydrolagus affinis (de Brito Capello, 1868) (Holocephali: Chimaeridae). Mitochondrial DNA Part B. 5(2):1810–1812.
  • Inoue JG, Miya M, Lam K, Tay BH, Danks JA, Bell J, Walker TI, Venkatesh B. 2010. Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective. Mol Biol Evol. 27(11):2576–2586.
  • James K, Ebert DA, Long DJ, Didier DA. 2009. A new species of chimaera, Hydrolagus melanophasma sp. nov. (Chondrichthyes: Chimaeriformes: Chimaeridae), from the eastern North Pacific. Zootaxa. 2218(1):59–68.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, Von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589.
  • Lopes-Marques M, Delgado ILS, Ruivo R, Torres Y, Sainath SB, Rocha E, Cunha I, Santos MM, Castro LFC. 2015. The origin and diversity of Cpt1 genes in vertebrate species. PLOS One. 10(9):e0138447.
  • Meng G, Li Y, Yang C, Liu S. 2019. MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic Acids Res. 47(11):e63.
  • Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Penn O, Privman E, Ashkenazy H, Landan G, Graur D, Pupko T. 2010. GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Res. 38(Web Server Issue):W23–W28.