1,885
Views
5
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

A new set of highly efficient primers for COI amplification in rotifers

, , ORCID Icon, &
Pages 636-640 | Received 02 Sep 2020, Accepted 18 Jan 2021, Published online: 19 Feb 2021

References

  • Alcántara-Rodriguez JA, Ciros-Perez J, Ortega-Mayagoitia E, Serrania-Soto CR, Piedra-Ibarra E. 2012. Local adaptation in populations of a Brachionus group plicatilis cryptic species inhabiting three deep crater lakes in Central Mexico. Freshwater Biol. 57(4):728–740.
  • Birky CW. 2007. Workshop on barcoded DNA: application to rotifer phylogeny, evolution, and systematics. Hydrobiologia. 593(1):175–183.
  • Campillo S, Garcia-Roger EM, Carmona MJ, Serra M. 2011. Local adaptation in rotifer populations. Evol Ecol. 25(4):933–947.
  • Derry AM, Hebert PDN, Prepas EE. 2003. Evolution of rotifers in saline and subsaline lakes: a molecular phylogenetic approach. Limnol Oceanogr. 48(2):675–685.
  • Duggan IC, Green JD, Shiel RJ. 2001. Distribution of rotifers in North Island, New Zealand, and their potential use as bioindicators of lake trophic state. Hydrobiologia. 446/447:155–164.
  • Elias-Gutierrez M, Juracka PJ, Montoliu-Elena L, Miracle MR, Petrusek A, Korinek V. 2019. Who is Moina micrura? Redescription of one of the most confusing cladocerans from terra typica, based on integrative taxonomy. Limnetica. 38(1):227–252.
  • Elias-Gutierrez M, Valdez-Moreno M, Topan J, Young MR, Cohuo-Colli JA. 2018. Improved protocols to accelerate the assembly of DNA barcode reference libraries for freshwater zooplankton. Ecol Evol. 8(5):3002–3018.
  • Flot J-F, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EGJ, Hejnol A, Henrissat B, Koszul R, Aury J-M, et al. 2013. Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature. 500(7463):453–457.
  • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol. 3(5):294–299.
  • Garcia-Morales AE, Elias-Gutierrez M. 2013. DNA barcoding of freshwater Rotifera in Mexico: Evidence of cryptic speciation in common rotifers. Mol Ecol Resour. 13(6):n/a–1107.
  • Geller J, Meyer C, Parker M, Hawk H. 2013. Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys. Mol Ecol Resour. 13(5):851–861.
  • Gomez A, Serra M, Carvalho GR, Lunt DH. 2002. Speciation in ancient cryptic species complexes: evidence from the molecular phylogeny of Brachionus plicatilis (Rotifera). Evolution. 56(7):1431–1444.
  • Hebert PDN, Ratnasingham S, de Waard JR. 2003. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc Roy Soc Lond B. 270:96–99.
  • Hirai J, Shimode S, Tsuda A. 2013. Evaluation of ITS2-28S as a molecular marker for identification of calanoid copepods in the subtropical western North Pacific. J Plankton Res. 35(3):644–656.
  • Knowlton N, Weigt LA. 1998. New dates and new rates for divergence across the Isthmus of Panama. Proc R Soc Lond B. 265(1412):2257–2263.
  • Kumazaki T, Hori H, Osawa S, Ishii N, Suzuki K. 1982. The nucleotide sequences of 5s rRNAs from a rotifer, Brachionus plicatilis, and two nematodes, Rhabditis tokai and Caenorhabditis elegans. Nucleic Acids Res. 10(21):7001–7004.
  • Li D, Liu C-M, Luo R, Sadakane K, Lam T-W. 2015. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics. 31(10):1674–1676.
  • Meyer CP, Geller JB, Paulay G. 2005. Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods. Evolution. 59(1):113–125.
  • Mills S, Alcántara-Rodríguez JA, Ciros-Pérez J, Gómez A, Hagiwara A, Galindo KH, Jersabek CD, Malekzadeh-Viayeh R, Leasi F, Lee J-S, et al. 2017. Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy. Hydrobiologia. 796(1):39–58.
  • Moreno E, Conde‐Porcuna JM, Gomez A. 2017. Barcoding rotifer biodiversity in Mediterranean ponds using diapausing egg banks. Ecol Evol. 7(13):4855–4867.
  • Proios K, Michaloudi E, Papakostas S, Kappas I, Vasileiadou K, Abatzopoulos TJ. 2014. Updating the description and taxonomic status of Brachionus sessilis Varga, 1951 (Rotifera: Brachionidae) based on detailed morphological analysis and molecular data. Zootaxa. 3873(4):345–370.
  • Putz H, Brandenburg K. 2006. DIAMOND-crystal and molecular structure visualization. Crystal Impact-GbR, Kreuzherrenstr. 102:53227.
  • Radix P, Severin G, Schramm KW, Kettrup A. 2002. Reproduction disturbances of Brachionus calyciflorus (rotifer) for the screening of environmental endocrine disrupters. Chemosphere. 47(10):1097–1101.
  • Ratnasingham S, Hebert PDN. 2007. Bold: the barcode of life data system (http://www.barcodinglife.org). Mol Ecol Notes. 7(3):355–364.
  • Rico-Martínez R, Snell TW, Shearer TL. 2013. Synergistic toxicity of Macondo crude oil and dispersant Corexit 9500A(®) to the Brachionus plicatilis species complex (Rotifera). Environ Pollut. 173:5–10.
  • Rublee PA. 1998. Rotifers in arctic North America with particular reference to their role in microplankton community structure and response to ecosystem perturbations in Alaskan Arctic LTER lakes. Hydrobiologia. 387/387:153–160.
  • Segers H. 2007. Annotated checklist of the rotifers (Phylum Rotifera), with notes on nomenclature, taxonomy and distribution. Zootaxa. 1564(1):1–104.
  • Sladecek V. 1983. Rotifers as indicators of water quality. Hydrobiologia. 100(1):169–201.
  • Sørensen MV, Giribet G. 2006. A modern approach to rotiferan phylogeny: combining morphological and molecular data. Mol Phylogenet Evol. 40(2):585–608.
  • Wares JP, Cunningham CW. 2001. Phylogeography and historical ecology of the North Atlantic intertidal. Evolution. 55(12):2455–2469.
  • Wilts EF, D. Bruns D, Fontaneto D, Ahlrichs WH. 2012. Phylogenetic study on Proales daphnicola Thompson, 1892 (Proalidae) and its relocation to Epiphanes (Rotifera: Epiphanidae). Zool Anz. 251(3):180–196.