907
Views
0
CrossRef citations to date
0
Altmetric
Rapid Communication

Peculiarities of the inverted repeats in the complete chloroplast genome of Strobilanthes bantonensis Lindau

, , , , & ORCID Icon
Pages 1440-1447 | Received 12 Aug 2020, Accepted 29 Mar 2021, Published online: 22 Apr 2021

References

  • Akowuah GA, Chin JH, Yeong SW, Quah SY, Ahmad M. 2020. In-vitro CYP3A4 , CYP2E1 and UGT Activity in Human Liver Microsomes by Strobilanthes crispus Leaf Extracts. NPJ. 10(2):104–112.
  • Amiryousefi A, Hyvönen J, Poczai P. 2018. IRscope: an online program to visualize the junction sites of chloroplast genomes. Bioinformatics. 34(17):3030–3031.
  • Asaf S, Khan AL, Khan MA, Waqas M, Kang SM, Yun BW, Lee IJ. 2017. Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: structures and comparative analysis. Sci Rep. 7(1):7556.
  • Beier S, Thiel T, Münch T, Scholz U, Mascher M. 2017. MISA-web: a web server for microsatellite prediction. Bioinformatics. 33(16):2583–2585.
  • Chen H, Shao J, Zhang H, Jiang M, Huang L, Zhang Z, Yang D, He M, Ronaghi M, Luo X. 2018. Sequencing and analysis of Strobilanthes cusia (Nees) Kuntze chloroplast genome revealed the rare simultaneous contraction and expansion of the inverted repeat region in angiosperm. Front Plant Sci. 9:324.
  • Chia-Lin L, Chien-Ming W, Hao-Chun H, Hung-Rong Y, Ying-Chyi S, Sheng-Jie Y, Yang-Chang W. 2019. Indole alkaloids indigodoles A-C from aerial parts of Strobilanthes cusia in the traditional Chinese medicine Qing Dai have anti-IL-17 properties. Phytochemistry. 162: 39–46.
  • Chin JE, Ikhtifar MRM, Khoo CH, Ho KL, Cheah YK. 2017. Analysis of chemical constituents, antimicrobial and anticancer activities of dichloromethane extracts of Sordariomycetes sp. endophytic fungi isolated from Strobilanthes crispus. World J Microbiol Biotechnol. 33(1):5.
  • Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, Boore JL, Jansen RK. 2006. The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Mol Biol Evol. 23(11):2175–2190.
  • Deng Y, J.-Q H, Daniel TF, Wood J, Wood JRI. 2011. Acanthaceae. In: Flora of China. Vol. 19. Beijing: Science Press.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Ding P, Shao Y, Li Q, Gao J, Zhang R, Lai X, Wang D, Zhang H. 2016. The complete chloroplast genome sequence of the medicinal plant Andrographis paniculata. Mitochondrial DNA A DNA Mapp Seq Anal. 27(4):2347–2348.
  • Gao C, Deng Y, Wang J. 2018. The complete chloroplast genomes of Echinacanthus species (Acanthaceae): phylogenetic relationships, adaptive evolution, and screening of molecular markers. Front Plant Sci. 9:1989.
  • Goulding SE, Olmstead RG, Morden CW, Wolfe KH. 1996. Ebb and flow of the chloroplast inverted repeat. Mol Gen Genet. 252(1-2):195–206.
  • Gu W, Wang W, Li X-N, Zhang Y, Wang L-P, Yuan C-M, Huang L-J, Hao X-J. 2015. A novel isocoumarin with anti-influenza virus activity from Strobilanthes cusia. Fitoterapia. 107:60–62.
  • Han X, Mingxian L, Yide L. 2011. Strobilanthes bantonensis Lindau, a newly recorded species of Acanthaceae from Hainan, China. J Tropical Organ. 2(4):302–304.
  • Heslop-Harrison JS. 2000. Comparative genome organization in plants: from sequence and markers to chromatin and chromosomes. Plant Cell. 12(5):617–636.
  • Huang S, Ge X, Cano A, Salazar BGM, Deng Y. 2020. Comparative analysis of chloroplast genomes for five Dicliptera species (Acanthaceae): molecular structure, phylogenetic relationships, and adaptive evolution. PeerJ. 8:e8450.
  • Ko HC, Wei BL, Chiou WF. 2006. The effect of medicinal plants used in Chinese folk medicine on RANTES secretion by virus-infected human epithelial cells. J Ethnopharmacol. 107(2):205–210.
  • Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R. 2001. REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res. 29(22):4633–4642.
  • Lee HO, Joh HJ, Kim K, Lee SC, Kim NH, Park JY, Yang TJ. 2019. Dynamic chloroplast genome rearrangement and DNA barcoding for three Apiaceae species known as the medicinal herb “Bang-Poong.” Int J Mol Sci. 20(9): 2196.
  • Lei W, Ni D, Wang Y, Shao J, Wang X, Yang D, Wang J, Chen H, Liu C. 2016. Intraspecific and heteroplasmic variations, gene losses and inversions in the chloroplast genome of Astragalus membranaceus. Sci Rep. 6:21669.
  • Lewis SE, Searle SMJ, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA. 2002. Apollo: a sequence annotation editor. Genome Biol. 3(12):research0082–0014.
  • Li M-N, Pei H-Q, Wang J-H, Zhao K-K, Zhu Z-X, Wang H-F. 2019. Complete plastome sequence of Clinacanthus nutans (Acanthaceae): a medicinal species in Southern China. Mitochondrial DNA B. 4(1):118–119.
  • Lingfei G. 2016. “Hot" and "Cold" of purple Economy (Master). Nanning (Guangxi): Guangxi University for Nationalities.
  • Manaf SR, Manaf SR, Daud HM, Daud HM, Alimon AR, Mustapha NM, Hamid NH. 2016. The effects of Vitex trifolia, Strobilanthes crispus and Aloe vera herbal-mixed dietary supplementation on growth performance and disease resistance in red hybrid Tilapia (Oreochromis sp.). J Aquacult Res Dev. 7(4):425.
  • Mccann J, Jang T-S, Macas J, Schneeweiss GM, Matzke NJ, Novák P, Stuessy TF, Villaseñor JL, Weiss-Schneeweiss H. 2018. Dating the species network: allopolyploidy and repetitive DNA evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae). Syst Biol. 67(6):1010–1024.
  • Ni Y, Song R, Kokot S. 2012. Discrimination of Radix Isatidis and Rhizoma et Radix Baphicacanthis Cusia samples by near infrared spectroscopy with the aid of chemometrics. Spectrochim Acta A Mol Biomol Spectrosc. 96:252–258.
  • Pharmacopoeia. 2015. Pharmacopoeia of the people's Republic of China. Vol. 1. Beijing: China Medical Science Press.
  • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16(6):276–277. TIG,
  • Rozewicki J, Li S, Amada KM, Standley DM, Katoh K. 2019. MAFFT-DASH: integrated protein sequence and structural alignment. Nucleic Acids Res. 47(W1):W5–W10.
  • Sablok G, Nayak KC, Vazquez F, Tatarinova TV. 2011. Synonymous codon usage, GC(3), and evolutionary patterns across plastomes of three pooid model species: emerging grass genome models for monocots. Mol Biotechnol. 49(2):116–128.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Shilin S, Tingting Z, Bo M, Ke H, Xiaobiao Z. 2011. Study on the ethnobotany in the minority area of Baise Region. Anhui Agric Sci Bull. 17(23):123.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30(12):2725–2729.
  • Yaradua SS, Alzahrani DA, Albokhary EJ, Abba A, Bello A. 2019. Complete chloroplast genome sequence of Justicia flava: genome comparative analysis and phylogenetic relationships among Acanthaceae. Biomed Res Int. 2019:1–17.
  • Yu-Chi T, Chia-Lin L, Hung-Rong Y, Young-Sheng C, Yu-Ping L, Su-Hua H, Cheng-Wen L. 2020. Antiviral action of Tryptanthrin isolated from Strobilanthes cusia leaf against human coronavirus NL63. Biomolecules. 10(3):366.
  • Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355.