790
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genome of the harmful algal bloom species Thalassiosira nordenskioeldii (Mediophyceae, Bacillariophyta) from the east China sea

, , , ORCID Icon &
Pages 1421-1423 | Received 16 Feb 2021, Accepted 26 Mar 2021, Published online: 15 Apr 2021

References

  • Alverson AJ, Beszteri B, Julius ML, Theriot EC. 2011. The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella. BMC Evol Biol. 11:125–125.
  • Alverson AJ, Jansen RK, Theriot EC. 2007. Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms. Mol Phylogenet Evol. 45(1):193–210.
  • Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973.
  • Cleve PT. 1873. On diatoms from the Arctic Sea. Bihang till Kongliga Svenska Vetenskaps-Akademiens Handlingar. 1:1–28.
  • Ehara M, Inagaki Y, Watanabe KI, Ohama T. 2000a. Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution. Curr Genet. 37(1):29–33.
  • Ehara M, Watanabe KI, Ohama T. 2000b. Distribution of cognates of group II introns detected in mitochondrial cox1 genes of a diatom and a haptophyte. Gene. 256(1–2):157–167.
  • Hoppenrath M, Beszteri B, Drebes G, Halliger H, Van Beusekom JEE, Janisch S, Wiltshire KH. 2007. Thalassiosiraspecies (Bacillariophyceae, Thalassiosirales) in the North Sea at Helgoland (German Bight) and Sylt (North Frisian Wadden Sea) – a first approach to assessing diversity. Eur J Phycol. 42(3):271–288.
  • Kaczmarska I, Beaton M, Benoit AC, Medlin LK. 2006. Molecular phylogeny of selected members of the order Thalassiosirales (Bacillariophyta) and evolution of the Fultoportula. J Phycol. 42(1):121–138.
  • Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T. 2019. Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions. Nat Commun. 10(1):1702.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Li H, Durbin R. 2010. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 26(5):589–595.
  • Li Y, Zhao Q, Lü S. 2013. The genus Thalassiosira off the Guangdong coast, South China Sea. Botanica Marina. 56(1):83–110.
  • Smith SA, Dunn CW. 2008. Phyutility: a phyloinformatics tool for trees, alignments and molecular data. Bioinformatics. 24(5):715–716.
  • Stoermer EF, Julius ML. 2003. Centric Diatoms. In: Freshwater Algae of North America. (Wehr, J.D. & Sheath, R.G. Eds), pp. 559-594. San Diego: Academic Press.
  • Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 44(W1):W232–235.