1,731
Views
3
CrossRef citations to date
0
Altmetric
Rapid Communication

Molecular identification of Aquilaria species with distribution records in China using DNA barcode technology

Pages 1525-1535 | Received 20 Oct 2020, Accepted 03 Apr 2021, Published online: 26 Apr 2021

References

  • (CITES) CoITiESoWFaF. 2004. Consideration of proposals for amendment of appendices I and II – Aquilaria spp. and Gyrinops spp. Thirteenth meeting of the Conference of the Parties, Bangkok, Thailand, 2–14 October.
  • Chen S, Yao H, Han J, Liu C, Song J, Shi L, Zhu Y, Ma X, Gao T, Pang X, et al. 2010. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One. 5(1):e8613.
  • Committee SP. 2020. Pharmacopoeia of the people's Republic of China. Beijing: China Pharmaceutical Science and Technology Press.
  • Eurlings M, Gravendeel B. 2005. TrnL-trnF sequence data imply paraphyly of Aquilaria and Gyrinops (Thymelaeaceae) and provide new perspectives for agarwood identification. Plant Syst Evol. 254(1–2):1–12.
  • FOC Eco. 1999. Flora of China. Vol. 52. Beijing: Science Press.
  • Gao Z, Zhao W, Sun P, Wei J. 2017. Species and conservation status of the endangered agarwood-producing genus Aquilaria. Mod Chin Med. 19(08):1057–1063.
  • Group CPW, Hollingsworth PM, Forrest LL, Spouge JL, Hajibabaei M, Ratnasingham S, van der Bank M, Chase MW, Cowan RS, Erickson DL. 2009. A DNA barcode for land plants. Proc Natl Acad Sci USA. 106(31):12794–12797.
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser. 41(41):95–98.
  • Hashim YZ, Kerr PG, Abbas P, Mohd Salleh H. 2016. Aquilaria spp. (agarwood) as source of health beneficial compounds: A review of traditional use, phytochemistry and pharmacology. J Ethnopharmacol. 189:331–360.
  • Hebert PD, Cywinska A, Ball SL, Dewaard JR. 2003. Biological identifications through DNA barcodes. Proc R Soc Lond B. 270(1512):313–321.
  • Hou D. 1960. Thymelaeaceae. Flora Malesiana-Series 1. Spermatophyta. 6(1):1–48.
  • Huang S. 1985. Taxa nova Thymelaeacearum sinicarum. Acta Botanica Yunnanica. 03:277–291.
  • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17(8):754–755.
  • Jiao L, Yin Y, Cheng Y, Jiang X. 2014. DNA barcoding for identification of the endangered species Aquilaria sinensis: comparison of data from heated or aged wood samples. Holzforschung. 68(4):487–494.
  • Kang Y, Liu Y, Yang Y, Feng J, Zheng X, Wei J. 2019. Screening of DNA barcoding sequences for identification of multiple species of Aquilaria L. Chin Pharm J. 54(23):1926–1932.
  • Kress WJ, Erickson DL. 2007. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS One. 2(6):e508.
  • Kress WJ, Erickson DL, Jones FA, Swenson NG, Perez R, Sanjur O, Bermingham E. 2009. Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proc Natl Acad Sci U S A. 106(44):18621–18626.
  • Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH. 2005. Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA. 102(23):8369–8374.
  • Lahaye R, van der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G, Maurin O, Duthoit S, Barraclough TG, Savolainen V. 2008. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci USA. 105(8):2923–2928.
  • Lee S, Mohamed R. 2016. Rediscovery of Aquilaria rostrata (Thymelaeaceae), a species thought to be extinct, and notes on Aquilaria conservation in Peninsular Malaysia. Blum - J Plant Tax and Plant Geog. 61(1):13–19.
  • Lee SY, Mohamed R, Faridah-Hanum I, Lamasudin DU. 2018. Utilization of the internal transcribed spacer (ITS) DNA sequence to trace the geographical sources of Aquilaria malaccensis Lam. populations. Plant Genet Resour. 16(2):103–111.
  • Lee SY, Ng WL, Mahat MN, Nazre M, Mohamed R. 2016. DNA barcoding of the endangered Aquilaria (Thymelaeaceae) and Its application in species authentication of agarwood products traded in the market. PLoS One. 11(4):e0154631.
  • Li Q, Yan H, Lin D, Wang Y, He M, Zhang W, Gao X, Zhu S. 2018. Molecular identification of three Aquilaria (Thymelaeaceae) species through DNA barcoding. Biol Pharm Bull. 41(6):967–971.
  • Liu Y, Chen H, Yang Y, Zhang Z, Wei J, Meng H, Chen W, Feng J, Gan B, Chen X, et al. 2013. Whole-tree agarwood-inducing technique: an efficient novel technique for producing high-quality agarwood in cultivated Aquilaria sinensis trees. Molecules. 18(3):3086–3106.
  • Liu P, Zhang X, Yang Y, Sui C, Xu Y, Wei J. 2019. Interxylary phloem and xylem rays are the structural foundation of agarwood resin formation in the stems of Aquilaria sinensis. Trees Struct Funct. 33(2):533–542.
  • Meier R, Shiyang K, Vaidya G, Ng PKL. 2006. DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Syst Biol. 55(5):715–728.
  • Newmaster SG, Fazekas AJ, Ragupathy S. 2006. DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach. Botany. 84(3):335–341.
  • Ren B, Chen Z. 2010. Plant DNA barcode technology. Bull Bot. 45(01):1–12.
  • Van Sam H, The Nha N, Van Chu T, Thanh Tuan N, Thi Tho N, Thanh Tam D, Bao Thanh L, Ngoc Hai T, Van Huan H, Thi Hang H, et al. 2019. Aquilaria yunnanensis S.C. Huang (Thymelaeaceae), a new record for the flora of Vietnam. FS. 3(2):202–208.
  • Sang T, Crawford DJ, Stuessy TF. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am J Bot. 84(8):1120–1136.
  • Santisuk T. 2007. Taxonomy geography and ecology of Aquilaria Lamk (Thymelaeaceae) in continental Asia. Second International Agarwood Conference March 5–6, Bangkok, Thailand.
  • Su J, Liu Z, Li R, Ren C, Yang X. 2016. Preliminary study on timber structure of Aquilaria yunnanensis. Chin J Trop Agric. 36(04):30–34.
  • Sudhir K, Glen S, Michael L, Christina K, Koichiro T. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Sun P-W, Xu Y-H, Yu C-C, Lv F-F, Tang X-L, Gao Z-H, Zhang Z, Wang H, Liu Y, Wei J-H. 2020. WRKY44 represses expression of the wound-induced sesquiterpene biosynthetic gene ASS1 in Aquilaria sinensis. J Exp Bot. 71(3):1128–1138.
  • Tate JA, Simpson BB. 2003. Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species. Syst Bot. 28(4):723–737.
  • Vaidya G, Lohman DJ, Meier R. 2011. SequenceMatrix: concatenation software for the fast assembly of multi‐gene datasets with character set and codon information. Cladistics. 27(2):171–180.
  • Wang Z, Cao H, Cai C, Wang Z. 2020. Using genetic markers to identify the origin of illegally traded agarwood-producing Aquilaria sinensis trees. Global Ecol Conserv. 22:e00958.
  • Wang J, Wang Y, Yan J, Li W, Dong W, Mei W, Dai H. 2019. Comparison of the anatomy structure and chemical compositions of agarwoods from two kinds of Aquilaria sinensis. Sci Silva Sin. 55(07):146–154.
  • Wang XY, Zheng SH, Liu Y, Han JP. 2016. ITS2, a better DNA barcode than ITS in identification of species in Artemisia L. Chinese Herbal Medicines. 8(4):352–358.