References
- Chen SF, Zhou YP, Chen YR, Gu J. 2018. Fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 34(17):i884–i890.
- Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 9(8):772–772.
- Du Q, Li B. 2012. Identification of antioxidant compounds of Mucuna sempervirens by high-speed counter-current chromatographic separation–dpph radical scavenging detection and their oestrogenic activity. Food Chem. 131(4):1181–1186.
- Faircloth BC. 2008. Msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design . Mol Ecol Resour. 8(1):92–94.
- Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, Madden TL. 2008. NCBI BLAST: a better web interface. Nucleic Acids Res. 36(Web Server issue):W5–W9.
- Katoh K, Rozewicki J, Yamada KD. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform. 20(4):1160–1166.
- Liu C, Shi LC, Zhu YJ, Chen HM, Zhang JH, Lin XH, Guan XJ. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13(1):715.
- Nicolas D, Patrick M, Guillaume S. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
- Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol. 57(5):758–771.