References
- Alverson AJ. 2016. Timing marine–freshwater transitions in the diatom order Thalassiosirales. Paleobiology. 40:91–101.
- Alverson AJ, Beszteri B, Julius ML, Theriot EC. 2011. The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella. BMC Evol Biol. 11:125.
- Arsenieff L, Le Gall F, Rigaut-Jalabert F, Mahe F, Sarno D, Gouhier L, Baudoux AC, Simon N. 2020. Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel. ISME J. 14:1966–1981.
- Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19:455–477.
- Chan PP, Lowe TM. 2019. tRNAscan-SE: searching for tRNA genes in genomic sequences. Methods Mol Biol. 1962:1–14.
- Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47:W59–W64.
- Guiry MD, Guiry GM. 2020. AlgaeBase. World-wide electronic publication. Galway: National University of Ireland. http://www.algaebase.org.
- Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T. 2019. Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions. Nat Commun. 10:1702.
- Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
- Li H, Durbin R. 2010. Fast and accurate long-read alignment with Burrows–Wheeler transform. Bioinformatics. 26:589–595.
- Li Y. 2006. Taxonomic studies and ecological characteristics on Nano-diatoms in coastal waters of China. Xiamen University, Xiamen, China.
- Li Y, Zhao Q, Lü S. 2013. The genus Thalassiosira off the Guangdong coast, South China Sea. Bot Mar. 56:83–110.
- Robinson JT, Thorvaldsdóttir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP. 2011. Integrative genomics viewer. Nat Biotechnol. 29:24–26.
- Sonnhammer ELL, Durbin R. 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene. 167:GC1-GC10.
- Stoermer EF, Julius ML. 2003. Centric Diatoms. In: Freshwater Algae of North America. (Wehr, J.D. & Sheath, R.G. Eds), pp. 559-594. San Diego: Academic Press.
- Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 44:W232–W235.