1,019
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Characterization and comparative analysis of the plastome sequence from Justicia ventricosa (Lamiales: Acanthaceae)

, , , , , , & ORCID Icon show all
Pages 2896-2902 | Received 23 Mar 2021, Accepted 14 Apr 2021, Published online: 14 Sep 2021

References

  • Bock R. 2015. Engineering plastid genomes: methods, tools, and applications in basic research and biotechnology. Annu Rev Plant Biol. 66:211–241.
  • Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M. 2012. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6(8):1621–1624.
  • Casanellas M, Fernández-Sánchez J, Roca-Lacostena J. 2020. Embeddability and rate identifiability of Kimura 2-parameter matrices. J Math Biol. 80(4):995–1019.
  • Chen H, Blanchette M. 2007. Detecting non-coding selective pressure in coding regions. BMC Evol Biol. 7(Suppl. 1):S9–S13.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Gomez J, Reyes R, Aguilar I. 1996. Chemistry and pharmacology of selected Asian and American medicinal species of Justicia. In: V.K. Gupta (Ed.) Bioactive Phytochemicals: "Perspectives for Modern Medicine", 1st ed.; p. 457–475. New Delhi: Daya Publishing House.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066.
  • Khaing WW, Yhu YM, Yee NN. 2020. Morphological and anatomical studies on Justicia adhatoda L. and Justicia ventricosa Wall. Myanmar Korea Conf Res J. 3:1088–1097.
  • Khan I, Shinwari ZK, Zahra NB, Jan SA, Shinwari S, Najeebullah S. 2020. DNA barcoding and molecular systematics of selected species of family Acanthaceae. Pak J Bot. 52(1):205–212.
  • Kitadi JM, Lengbiye EM, Gbolo BZ, Inkoto CL, Muanyishay CL, Lufuluabo GL, Tshibangu DS, Tshilanda DD, Mbala BM, Mpiana P. 2019. Justicia secunda Vahl species: phytochemistry, pharmacology and future directions: a mini-review. Disc Phytomed. 6(4):157–171.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874.
  • Lino C, Taveira M, Viana G, Matos F. 1997. Analgesic and antiinflammatory activities of Justicia pectoralis Jacq and its main constituents: coumarin and umbelliferone. Phytother Res. 11(3):211–215.
  • Nguyen L-T, Schmidt HA, Von HA, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Olejniczak SA, Łojewska E, Kowalczyk T, Sakowicz T. 2016. Chloroplasts: state of research and practical applications of plastome sequencing. Planta. 244(3):517–527.
  • Riaz T, Shehzad W, Viari A, Pompanon F, Taberlet P, Coissac E. 2011. ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis. Nucleic Acids Res. 39(21):e145.
  • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16(6):276–277.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Smith MD, Wertheim JO, Weaver S, Murrell B, Scheffler K, Kosakovsky Pond SL. 2015. Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection. Mol Biol Evol. 32(5):1342–1353.
  • Yaradua SS, Alzahrani DA, Albokhary EJ, Abba A, Bello A. 2019. Complete chloroplast genome sequence of Justicia flava: genome comparative analysis and phylogenetic relationships among Acanthaceae. BioMed Res Int. 2019:1–17.
  • Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355.