References
- Amiryousefi A, Hyvönen J, Poczai P. 2018. IRscope: an online program to visualize the junction sites of chloroplast genomes. Bioinformatics. 34(17):3030–3031.
- Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
- Doyle JJ, Doyle JL. 1986. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry. 19:11–15.
- Gao X, Zhang X, Meng H, Li J, Zhang D, Liu C. 2018. Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications. BMC Genomics. 19(10):878.
- Hao X, Xie C, Ruan Q, Zhang X, Wu C, Han B, Qian J, Zhou W, Nützmann HW, Kai G. 2021. The transcription factor OpWRKY2 positively regulates the biosynthesis of the anticancer drug camptothecin in Ophiorrhiza pumila. Hortic Res. 8(1):7.
- Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment soft-ware version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
- Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649.
- Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
- Lee JY, Hiyama M, Hikosaka S, Goto E. 2020. Effects of concentration and temperature of nutrient solution on growth and camptothecin accumulation of Ophiorrhiza pumila. Plants. 9(6):793.
- Liu H, Liao W, Fan L, Zheng Z, Liu D, Zhang QW, Yang A, Liu F. 2020. Ethanol extract of Ophiorrhiza pumila suppresses liver cancer cell proliferation and migration. Chin Med. 15:11.
- Liu W, Kong H, Zhou J, Fritsch PW, Hao G, Gong W. 2018. Complete chloroplast genome of Cercis chuniana (Fabaceae) with structural and genetic comparison to six species in Caesalpinioideae. Int J Mol Sci. 19(5):1286.
- Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, et al. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaSci. 1(1):18.
- Mehmood F, Abdullah , Shahzadi I, Ahmed I, Waheed MT, Mirza B. 2020. Characterization of Withania somnifera chloroplast genome and its comparison with other selected species of Solanaceae. Genomics. 112(2):1522–1530.
- Mehmood F, Abdullah , Ubaid Z, Bao Y, Poczai P, Mirza B. 2020. Comparative plastomics of Ashwagandha (Withania, Solanaceae) and identification of mutational hotspots for barcoding medicinal plants. Plants. 9(6):752.
- Mehmood F, Abdullah , Ubaid Z, Shahzadi I, Ahmed I, Waheed MT, Poczai P, Mirza B. 2020. Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco (Nicotiana rustica). PeerJ. 8:e9552.
- Taher M, Shaari SS, Susanti D, Arbain D, Zakaria ZA. 2020. Genus Ophiorrhiza: a review of its distribution, traditional uses, phytochemistry, biological activities and propagation. Molecules. 25(11):2611.