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Mitochondrial DNA Part B
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Volume 6, 2021 - Issue 7
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Mitogenome Announcement

The complete chloroplast genome of Atractylodes japonica Koidz. ex Kitam. and its phylogenetic inference

Mengmeng Shia Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, ChinaView further author information
,
Hongbo Xiea Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, ChinaView further author information
,
Chunying Zhaoa Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, ChinaView further author information
,
Linchun Shib Chinese Academy of Medical Sciences and Peking Union Medical College, Institute of Medicinal Plant Development, Beijing, ChinaView further author information
,
Jinxin Liua Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, ChinaCorrespondence[email protected]
View further author information
&
Zhongsi Lia Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, ChinaCorrespondence[email protected]
View further author information
Pages 2038-2040 | Received 13 Jan 2021, Accepted 03 May 2021, Published online: 29 Jun 2021

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
  • Cai H, Chen C, Wang Y, Wang H. 2020. The complete plastome sequence of Atractylodes macrocephala (Asteraceae: Cardueae), an important medicinal plant in East Asia. Mitochondrial DNA Part B. 5(1):951–952.
  • Cho H-D, Kim U, Suh JH, Eom HY, Kim J, Lee SG, Choi YS, Han SB. 2016. Classification of the medicinal plants of the genus Atractylodes using high-performance liquid chromatography with diode array and tandem mass spectrometry detection combined with multivariate statistical analysis. J Sep Science. 39(7):1286–1294.
  • Commission CP. 2020. Pharmacopoeia of the People's Republic of China Part I. Beijing: China Medical Science Press; p. 168–169.
  • Jeong J-T, Chung H, Ha B-K, Gil J, Lee J-H, Lee Y-J, Kim MR, Oh MW, Park CG, Chang JK, et al. 2020. Development of 18 microsatellite markers for Atractylodes japonica. Appl Plant Sci. 8(5):e11350.
  • Kim J-H, Doh E-J, Lee G. 2016. Evaluation of medicinal categorization of Atractylodes japonica Koidz. by using internal transcribed spacer sequencing analysis and HPLC fingerprinting combined with statistical tools. Evid Based Complementary Altern Med. 2016:1–12.
  • Kim J-H, Doh E-J, Lee G. 2018. Chemical differentiation of genetically identified Atractylodes japonica, A. macrocephala, and A. chinensis rhizomes using high-performance liquid chromatography with chemometric analysis. Evid Based Complementary Altern Med. 2018:1–16.
  • Linrong S. 1987. Flora of China. Vol. 78. Beijing: Science Press; p. 23–29.
  • Mehmood F, Abdullah  , Shahzadi I, Ahmed I, Waheeda MT, Mirzaa B. 2020. Characterization of Withania somnifera chloroplast genome and its comparison with other selected species of Solanaceae. Genomics. 112:1522–1530.
  • Nicolas D, Patrick M, Guillaume S. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45:e18–e18.
  • Porebski S, Bailey LG, Baum BR. 1997. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep. 15(1):8–15.
  • Rui M, Chou G. 2020. Three new polyacetylenes from Atractylodes japonica Koidz.ez Kitam [published online ahead of print, 2020 Nov 12]. Nat Prod Res. 1–8.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47:W65–W73.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Sun L, Jiang Z, Wan X, Zou X, Yao X, Wang Y, Yin Z. 2020. The complete chloroplast genome of Magnolia polytepala: comparative analyses offer implication for genetics and phylogeny of Yulania. Gene. 736:144410.
  • Susanna A, Jacas NG, Soltis DE, Soltis PS. 1995. Phylogenetic relationships in tribe Cardueae (Asteraceae) based on ITS sequences. Am J Bot. 82(8):1056–1068.
  • Wang Y, Wang S, Liu Y, Yuan Q, Sun J, Guo L. 2021. Chloroplast genome variation and phylogenetic relationships of Atractylodes species. BMC Genomics. 22:103.

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